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CPNE4 (copine 4)

Identity

Alias_namescopine IV
Alias_symbol (synonym)COPN4
CPN4
Other alias
HGNC (Hugo) CPNE4
LocusID (NCBI) 131034
Atlas_Id 54233
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 131533560 and ends at 132037804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD10 (13q34) / CPNE4 (3q22.1)CPNE4 (3q22.1) / ACAD11 (3q22.1)CPNE4 (3q22.1) / CPNE4 (3q22.1)
CPNE4 (3q22.1) / CSF1R (5q32)CPNE4 (3q22.1) / PSAT1 (9q21.2)CPNE4 (3q22.1) / USP48 (1p36.12)
CPNE4 (3q22.1) / ZDHHC5 (11q12.1)LLGL2 (17q25.1) / CPNE4 (3q22.1)PLXNA1 (3q21.3) / CPNE4 (3q22.1)
PZP (12p13.31) / CPNE4 (3q22.1)LLGL2 17q25.1 / CPNE4 3q22.1PZP 12p13.31 / CPNE4 3q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPNE4   2317
Cards
Entrez_Gene (NCBI)CPNE4  131034  copine 4
AliasesCOPN4; CPN4
GeneCards (Weizmann)CPNE4
Ensembl hg19 (Hinxton)ENSG00000196353 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196353 [Gene_View]  chr3:131533560-132037804 [Contig_View]  CPNE4 [Vega]
ICGC DataPortalENSG00000196353
TCGA cBioPortalCPNE4
AceView (NCBI)CPNE4
Genatlas (Paris)CPNE4
WikiGenes131034
SOURCE (Princeton)CPNE4
Genetics Home Reference (NIH)CPNE4
Genomic and cartography
GoldenPath hg38 (UCSC)CPNE4  -     chr3:131533560-132037804 -  3q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPNE4  -     3q22.1   [Description]    (hg19-Feb_2009)
EnsemblCPNE4 - 3q22.1 [CytoView hg19]  CPNE4 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBICPNE4 [Mapview hg19]  CPNE4 [Mapview hg38]
OMIM604208   
Gene and transcription
Genbank (Entrez)AF465770 AF465771 AK056175 AK128117 AK295557
RefSeq transcript (Entrez)NM_001289112 NM_130808 NM_153429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPNE4
Cluster EST : UnigeneHs.199877 [ NCBI ]
CGAP (NCI)Hs.199877
Alternative Splicing GalleryENSG00000196353
Gene ExpressionCPNE4 [ NCBI-GEO ]   CPNE4 [ EBI - ARRAY_EXPRESS ]   CPNE4 [ SEEK ]   CPNE4 [ MEM ]
Gene Expression Viewer (FireBrowse)CPNE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131034
GTEX Portal (Tissue expression)CPNE4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A23
Splice isoforms : SwissVarQ96A23
PhosPhoSitePlusQ96A23
Domaine pattern : Prosite (Expaxy)C2 (PS50004)   
Domains : Interpro (EBI)C2_dom    Copine    VWF_A   
Domain families : Pfam (Sanger)C2 (PF00168)    Copine (PF07002)   
Domain families : Pfam (NCBI)pfam00168    pfam07002   
Domain families : Smart (EMBL)C2 (SM00239)  VWA (SM00327)  
Conserved Domain (NCBI)CPNE4
DMDM Disease mutations131034
Blocks (Seattle)CPNE4
SuperfamilyQ96A23
Human Protein AtlasENSG00000196353
Peptide AtlasQ96A23
HPRD05017
IPIIPI00059186   IPI00219842   IPI00964084   IPI00967675   IPI00964931   
Protein Interaction databases
DIP (DOE-UCLA)Q96A23
IntAct (EBI)Q96A23
FunCoupENSG00000196353
BioGRIDCPNE4
STRING (EMBL)CPNE4
ZODIACCPNE4
Ontologies - Pathways
QuickGOQ96A23
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
NDEx NetworkCPNE4
Atlas of Cancer Signalling NetworkCPNE4
Wikipedia pathwaysCPNE4
Orthology - Evolution
OrthoDB131034
GeneTree (enSembl)ENSG00000196353
Phylogenetic Trees/Animal Genes : TreeFamCPNE4
HOVERGENQ96A23
HOGENOMQ96A23
Homologs : HomoloGeneCPNE4
Homology/Alignments : Family Browser (UCSC)CPNE4
Gene fusions - Rearrangements
Fusion : MitelmanCPNE4/ACAD11 [3q22.1/3q22.1]  
Fusion : MitelmanLLGL2/CPNE4 [17q25.1/3q22.1]  [t(3;17)(q22;q25)]  
Fusion : MitelmanPLXNA1/CPNE4 [3q21.3/3q22.1]  [t(3;3)(q21;q22)]  
Fusion : MitelmanPZP/CPNE4 [12p13.31/3q22.1]  [t(3;12)(q22;p13)]  
Fusion: TCGALLGL2 17q25.1 CPNE4 3q22.1 PRAD
Fusion: TCGAPZP 12p13.31 CPNE4 3q22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPNE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPNE4
dbVarCPNE4
ClinVarCPNE4
1000_GenomesCPNE4 
Exome Variant ServerCPNE4
ExAC (Exome Aggregation Consortium)CPNE4 (select the gene name)
Genetic variants : HAPMAP131034
Genomic Variants (DGV)CPNE4 [DGVbeta]
DECIPHERCPNE4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPNE4 
Mutations
ICGC Data PortalCPNE4 
TCGA Data PortalCPNE4 
Broad Tumor PortalCPNE4
OASIS PortalCPNE4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPNE4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPNE4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPNE4
DgiDB (Drug Gene Interaction Database)CPNE4
DoCM (Curated mutations)CPNE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPNE4 (select a term)
intoGenCPNE4
Cancer3DCPNE4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604208   
Orphanet
MedgenCPNE4
Genetic Testing Registry CPNE4
NextProtQ96A23 [Medical]
TSGene131034
GENETestsCPNE4
Huge Navigator CPNE4 [HugePedia]
snp3D : Map Gene to Disease131034
BioCentury BCIQCPNE4
ClinGenCPNE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131034
Chemical/Pharm GKB GenePA26834
Clinical trialCPNE4
Miscellaneous
canSAR (ICR)CPNE4 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPNE4
EVEXCPNE4
GoPubMedCPNE4
iHOPCPNE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:11:38 CEST 2017

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