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CPNE5 (copine 5)

Identity

Alias_namescopine V
Alias_symbol (synonym)CPN5
COPN5
KIAA1599
Other alias
HGNC (Hugo) CPNE5
LocusID (NCBI) 57699
Atlas_Id 50946
Location 6p21.2  [Link to chromosome band 6p21]
Location_base_pair Starts at 36740778 and ends at 36839444 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CPNE5 (6p21.2) / CPNE5 (6p21.2)PLD3 (19q13.2) / CPNE5 (6p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPNE5   2318
Cards
Entrez_Gene (NCBI)CPNE5  57699  copine 5
AliasesCOPN5; CPN5
GeneCards (Weizmann)CPNE5
Ensembl hg19 (Hinxton)ENSG00000124772 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124772 [Gene_View]  ENSG00000124772 [Sequence]  chr6:36740778-36839444 [Contig_View]  CPNE5 [Vega]
ICGC DataPortalENSG00000124772
TCGA cBioPortalCPNE5
AceView (NCBI)CPNE5
Genatlas (Paris)CPNE5
WikiGenes57699
SOURCE (Princeton)CPNE5
Genetics Home Reference (NIH)CPNE5
Genomic and cartography
GoldenPath hg38 (UCSC)CPNE5  -     chr6:36740778-36839444 -  6p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPNE5  -     6p21.2   [Description]    (hg19-Feb_2009)
EnsemblCPNE5 - 6p21.2 [CytoView hg19]  CPNE5 - 6p21.2 [CytoView hg38]
Mapping of homologs : NCBICPNE5 [Mapview hg19]  CPNE5 [Mapview hg38]
OMIM604209   
Gene and transcription
Genbank (Entrez)AA912142 AB046819 AI951562 AI989513 AK124222
RefSeq transcript (Entrez)NM_001314017 NM_001314018 NM_001314019 NM_001314020 NM_020939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPNE5
Cluster EST : UnigeneHs.657869 [ NCBI ]
CGAP (NCI)Hs.657869
Alternative Splicing GalleryENSG00000124772
Gene ExpressionCPNE5 [ NCBI-GEO ]   CPNE5 [ EBI - ARRAY_EXPRESS ]   CPNE5 [ SEEK ]   CPNE5 [ MEM ]
Gene Expression Viewer (FireBrowse)CPNE5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57699
GTEX Portal (Tissue expression)CPNE5
Human Protein AtlasENSG00000124772-CPNE5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCH3
Splice isoforms : SwissVarQ9HCH3
PhosPhoSitePlusQ9HCH3
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    VWFA (PS50234)   
Domains : Interpro (EBI)C2_dom    C2_domain_sf    C2B_Copine    Copine    VWF_A    vWFA_dom_sf   
Domain families : Pfam (Sanger)C2 (PF00168)    Copine (PF07002)   
Domain families : Pfam (NCBI)pfam00168    pfam07002   
Domain families : Smart (EMBL)C2 (SM00239)  VWA (SM00327)  
Conserved Domain (NCBI)CPNE5
DMDM Disease mutations57699
Blocks (Seattle)CPNE5
SuperfamilyQ9HCH3
Human Protein Atlas [tissue]ENSG00000124772-CPNE5 [tissue]
Peptide AtlasQ9HCH3
HPRD05018
IPIIPI00030532   IPI00797798   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCH3
IntAct (EBI)Q9HCH3
FunCoupENSG00000124772
BioGRIDCPNE5
STRING (EMBL)CPNE5
ZODIACCPNE5
Ontologies - Pathways
QuickGOQ9HCH3
Ontology : AmiGOmolecular_function  calcium-dependent phospholipid binding  plasma membrane  neuron projection  perikaryon  extracellular exosome  cellular response to calcium ion  positive regulation of dendrite extension  
Ontology : EGO-EBImolecular_function  calcium-dependent phospholipid binding  plasma membrane  neuron projection  perikaryon  extracellular exosome  cellular response to calcium ion  positive regulation of dendrite extension  
NDEx NetworkCPNE5
Atlas of Cancer Signalling NetworkCPNE5
Wikipedia pathwaysCPNE5
Orthology - Evolution
OrthoDB57699
GeneTree (enSembl)ENSG00000124772
Phylogenetic Trees/Animal Genes : TreeFamCPNE5
HOVERGENQ9HCH3
HOGENOMQ9HCH3
Homologs : HomoloGeneCPNE5
Homology/Alignments : Family Browser (UCSC)CPNE5
Gene fusions - Rearrangements
Fusion : QuiverCPNE5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPNE5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPNE5
dbVarCPNE5
ClinVarCPNE5
1000_GenomesCPNE5 
Exome Variant ServerCPNE5
ExAC (Exome Aggregation Consortium)ENSG00000124772
GNOMAD BrowserENSG00000124772
Varsome BrowserCPNE5
Genetic variants : HAPMAP57699
Genomic Variants (DGV)CPNE5 [DGVbeta]
DECIPHERCPNE5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPNE5 
Mutations
ICGC Data PortalCPNE5 
TCGA Data PortalCPNE5 
Broad Tumor PortalCPNE5
OASIS PortalCPNE5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPNE5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPNE5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPNE5
DgiDB (Drug Gene Interaction Database)CPNE5
DoCM (Curated mutations)CPNE5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPNE5 (select a term)
intoGenCPNE5
Cancer3DCPNE5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604209   
Orphanet
DisGeNETCPNE5
MedgenCPNE5
Genetic Testing Registry CPNE5
NextProtQ9HCH3 [Medical]
TSGene57699
GENETestsCPNE5
Target ValidationCPNE5
Huge Navigator CPNE5 [HugePedia]
snp3D : Map Gene to Disease57699
BioCentury BCIQCPNE5
ClinGenCPNE5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57699
Chemical/Pharm GKB GenePA26835
Clinical trialCPNE5
Miscellaneous
canSAR (ICR)CPNE5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPNE5
EVEXCPNE5
GoPubMedCPNE5
iHOPCPNE5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:59:57 CET 2018

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