Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CPNE6 (copine 6)

Identity

Alias_namescopine VI (neuronal)
Other alias-
HGNC (Hugo) CPNE6
LocusID (NCBI) 9362
Atlas_Id 62058
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 24070837 and ends at 24078100 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPNE6   2319
Cards
Entrez_Gene (NCBI)CPNE6  9362  copine 6
Aliases
GeneCards (Weizmann)CPNE6
Ensembl hg19 (Hinxton)ENSG00000100884 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100884 [Gene_View]  chr14:24070837-24078100 [Contig_View]  CPNE6 [Vega]
ICGC DataPortalENSG00000100884
TCGA cBioPortalCPNE6
AceView (NCBI)CPNE6
Genatlas (Paris)CPNE6
WikiGenes9362
SOURCE (Princeton)CPNE6
Genetics Home Reference (NIH)CPNE6
Genomic and cartography
GoldenPath hg38 (UCSC)CPNE6  -     chr14:24070837-24078100 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPNE6  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblCPNE6 - 14q11.2 [CytoView hg19]  CPNE6 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBICPNE6 [Mapview hg19]  CPNE6 [Mapview hg38]
OMIM605688   
Gene and transcription
Genbank (Entrez)AB009288 AK125195 AK222675 AK293655 AK294460
RefSeq transcript (Entrez)NM_001280558 NM_006032
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPNE6
Cluster EST : UnigeneHs.6132 [ NCBI ]
CGAP (NCI)Hs.6132
Alternative Splicing GalleryENSG00000100884
Gene ExpressionCPNE6 [ NCBI-GEO ]   CPNE6 [ EBI - ARRAY_EXPRESS ]   CPNE6 [ SEEK ]   CPNE6 [ MEM ]
Gene Expression Viewer (FireBrowse)CPNE6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9362
GTEX Portal (Tissue expression)CPNE6
Human Protein AtlasENSG00000100884-CPNE6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95741   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95741  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95741
Splice isoforms : SwissVarO95741
PhosPhoSitePlusO95741
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    VWFA (PS50234)   
Domains : Interpro (EBI)C2_dom    Copine    VWF_A   
Domain families : Pfam (Sanger)C2 (PF00168)    Copine (PF07002)   
Domain families : Pfam (NCBI)pfam00168    pfam07002   
Domain families : Smart (EMBL)C2 (SM00239)  VWA (SM00327)  
Conserved Domain (NCBI)CPNE6
DMDM Disease mutations9362
Blocks (Seattle)CPNE6
SuperfamilyO95741
Human Protein Atlas [tissue]ENSG00000100884-CPNE6 [tissue]
Peptide AtlasO95741
HPRD05748
IPIIPI01009428   IPI00295469   
Protein Interaction databases
DIP (DOE-UCLA)O95741
IntAct (EBI)O95741
FunCoupENSG00000100884
BioGRIDCPNE6
STRING (EMBL)CPNE6
ZODIACCPNE6
Ontologies - Pathways
QuickGOO95741
Ontology : AmiGOphosphatidylserine binding  transporter activity  calcium ion binding  protein binding  endosome  plasma membrane  lipid metabolic process  chemical synaptic transmission  nervous system development  membrane  vesicle-mediated transport  axon  dendrite  perikaryon  clathrin-coated endocytic vesicle  glycerophospholipid biosynthetic process  extracellular exosome  cellular response to calcium ion  positive regulation of dendrite extension  
Ontology : EGO-EBIphosphatidylserine binding  transporter activity  calcium ion binding  protein binding  endosome  plasma membrane  lipid metabolic process  chemical synaptic transmission  nervous system development  membrane  vesicle-mediated transport  axon  dendrite  perikaryon  clathrin-coated endocytic vesicle  glycerophospholipid biosynthetic process  extracellular exosome  cellular response to calcium ion  positive regulation of dendrite extension  
NDEx NetworkCPNE6
Atlas of Cancer Signalling NetworkCPNE6
Wikipedia pathwaysCPNE6
Orthology - Evolution
OrthoDB9362
GeneTree (enSembl)ENSG00000100884
Phylogenetic Trees/Animal Genes : TreeFamCPNE6
HOVERGENO95741
HOGENOMO95741
Homologs : HomoloGeneCPNE6
Homology/Alignments : Family Browser (UCSC)CPNE6
Gene fusions - Rearrangements
Tumor Fusion PortalCPNE6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPNE6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPNE6
dbVarCPNE6
ClinVarCPNE6
1000_GenomesCPNE6 
Exome Variant ServerCPNE6
ExAC (Exome Aggregation Consortium)ENSG00000100884
GNOMAD BrowserENSG00000100884
Genetic variants : HAPMAP9362
Genomic Variants (DGV)CPNE6 [DGVbeta]
DECIPHERCPNE6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPNE6 
Mutations
ICGC Data PortalCPNE6 
TCGA Data PortalCPNE6 
Broad Tumor PortalCPNE6
OASIS PortalCPNE6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPNE6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPNE6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPNE6
DgiDB (Drug Gene Interaction Database)CPNE6
DoCM (Curated mutations)CPNE6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPNE6 (select a term)
intoGenCPNE6
Cancer3DCPNE6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605688   
Orphanet
DisGeNETCPNE6
MedgenCPNE6
Genetic Testing Registry CPNE6
NextProtO95741 [Medical]
TSGene9362
GENETestsCPNE6
Target ValidationCPNE6
Huge Navigator CPNE6 [HugePedia]
snp3D : Map Gene to Disease9362
BioCentury BCIQCPNE6
ClinGenCPNE6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9362
Chemical/Pharm GKB GenePA26836
Clinical trialCPNE6
Miscellaneous
canSAR (ICR)CPNE6 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPNE6
EVEXCPNE6
GoPubMedCPNE6
iHOPCPNE6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:29:21 CET 2017

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