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CPNE7 (copine 7)

Identity

Alias_namescopine VII
Other alias-
HGNC (Hugo) CPNE7
LocusID (NCBI) 27132
Atlas_Id 40140
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89575768 and ends at 89597246 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BOLA2 (16p11.2) / CPNE7 (16q24.3)CPNE7 (16q24.3) / RPL13 (16q24.3)PABPC1L (20q13.12) / CPNE7 (16q24.3)
RPL13 (16q24.3) / CPNE7 (16q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPNE7   2320
Cards
Entrez_Gene (NCBI)CPNE7  27132  copine 7
Aliases
GeneCards (Weizmann)CPNE7
Ensembl hg19 (Hinxton)ENSG00000178773 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178773 [Gene_View]  chr16:89575768-89597246 [Contig_View]  CPNE7 [Vega]
ICGC DataPortalENSG00000178773
TCGA cBioPortalCPNE7
AceView (NCBI)CPNE7
Genatlas (Paris)CPNE7
WikiGenes27132
SOURCE (Princeton)CPNE7
Genetics Home Reference (NIH)CPNE7
Genomic and cartography
GoldenPath hg38 (UCSC)CPNE7  -     chr16:89575768-89597246 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPNE7  -     16q24.3   [Description]    (hg19-Feb_2009)
EnsemblCPNE7 - 16q24.3 [CytoView hg19]  CPNE7 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBICPNE7 [Mapview hg19]  CPNE7 [Mapview hg38]
OMIM605689   
Gene and transcription
Genbank (Entrez)AJ133798 AL539371 BC035334 BC064577 BU739859
RefSeq transcript (Entrez)NM_014427 NM_153636
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPNE7
Cluster EST : UnigeneHs.461775 [ NCBI ]
CGAP (NCI)Hs.461775
Alternative Splicing GalleryENSG00000178773
Gene ExpressionCPNE7 [ NCBI-GEO ]   CPNE7 [ EBI - ARRAY_EXPRESS ]   CPNE7 [ SEEK ]   CPNE7 [ MEM ]
Gene Expression Viewer (FireBrowse)CPNE7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27132
GTEX Portal (Tissue expression)CPNE7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBL6
Splice isoforms : SwissVarQ9UBL6
PhosPhoSitePlusQ9UBL6
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    VWFA (PS50234)   
Domains : Interpro (EBI)C2_dom    Copine    VWF_A   
Domain families : Pfam (Sanger)C2 (PF00168)    Copine (PF07002)   
Domain families : Pfam (NCBI)pfam00168    pfam07002   
Domain families : Smart (EMBL)C2 (SM00239)  VWA (SM00327)  
Conserved Domain (NCBI)CPNE7
DMDM Disease mutations27132
Blocks (Seattle)CPNE7
SuperfamilyQ9UBL6
Human Protein AtlasENSG00000178773
Peptide AtlasQ9UBL6
HPRD05749
IPIIPI00002657   IPI00219004   IPI00977984   IPI00982067   IPI00982705   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBL6
IntAct (EBI)Q9UBL6
FunCoupENSG00000178773
BioGRIDCPNE7
STRING (EMBL)CPNE7
ZODIACCPNE7
Ontologies - Pathways
QuickGOQ9UBL6
Ontology : AmiGOtransporter activity  protein binding  nucleus  cytoplasm  plasma membrane  plasma membrane  lipid metabolic process  transport  glycerophospholipid biosynthetic process  extracellular exosome  cellular response to calcium ion  
Ontology : EGO-EBItransporter activity  protein binding  nucleus  cytoplasm  plasma membrane  plasma membrane  lipid metabolic process  transport  glycerophospholipid biosynthetic process  extracellular exosome  cellular response to calcium ion  
NDEx NetworkCPNE7
Atlas of Cancer Signalling NetworkCPNE7
Wikipedia pathwaysCPNE7
Orthology - Evolution
OrthoDB27132
GeneTree (enSembl)ENSG00000178773
Phylogenetic Trees/Animal Genes : TreeFamCPNE7
HOVERGENQ9UBL6
HOGENOMQ9UBL6
Homologs : HomoloGeneCPNE7
Homology/Alignments : Family Browser (UCSC)CPNE7
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RPL13 [16q24.3]  -  CPNE7 [16q24.3]  [FUSC000218]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPNE7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPNE7
dbVarCPNE7
ClinVarCPNE7
1000_GenomesCPNE7 
Exome Variant ServerCPNE7
ExAC (Exome Aggregation Consortium)CPNE7 (select the gene name)
Genetic variants : HAPMAP27132
Genomic Variants (DGV)CPNE7 [DGVbeta]
DECIPHERCPNE7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPNE7 
Mutations
ICGC Data PortalCPNE7 
TCGA Data PortalCPNE7 
Broad Tumor PortalCPNE7
OASIS PortalCPNE7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPNE7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPNE7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPNE7
DgiDB (Drug Gene Interaction Database)CPNE7
DoCM (Curated mutations)CPNE7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPNE7 (select a term)
intoGenCPNE7
Cancer3DCPNE7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605689   
Orphanet
MedgenCPNE7
Genetic Testing Registry CPNE7
NextProtQ9UBL6 [Medical]
TSGene27132
GENETestsCPNE7
Huge Navigator CPNE7 [HugePedia]
snp3D : Map Gene to Disease27132
BioCentury BCIQCPNE7
ClinGenCPNE7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27132
Chemical/Pharm GKB GenePA26837
Clinical trialCPNE7
Miscellaneous
canSAR (ICR)CPNE7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPNE7
EVEXCPNE7
GoPubMedCPNE7
iHOPCPNE7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:11:38 CEST 2017

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