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CPNE9 (copine family member 9)

Identity

Alias_namescopine family member IX
Alias_symbol (synonym)KIAA4217
Other alias-
HGNC (Hugo) CPNE9
LocusID (NCBI) 151835
Atlas_Id 62059
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9703807 and ends at 9727449 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPNE9   24336
Cards
Entrez_Gene (NCBI)CPNE9  151835  copine family member 9
Aliases
GeneCards (Weizmann)CPNE9
Ensembl hg19 (Hinxton)ENSG00000144550 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144550 [Gene_View]  chr3:9703807-9727449 [Contig_View]  CPNE9 [Vega]
ICGC DataPortalENSG00000144550
TCGA cBioPortalCPNE9
AceView (NCBI)CPNE9
Genatlas (Paris)CPNE9
WikiGenes151835
SOURCE (Princeton)CPNE9
Genetics Home Reference (NIH)CPNE9
Genomic and cartography
GoldenPath hg38 (UCSC)CPNE9  -     chr3:9703807-9727449 +  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPNE9  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblCPNE9 - 3p25.3 [CytoView hg19]  CPNE9 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBICPNE9 [Mapview hg19]  CPNE9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA758411 BC035735 BC130375 BM545574 BU101942
RefSeq transcript (Entrez)NM_001308388 NM_153635
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPNE9
Cluster EST : UnigeneHs.121335 [ NCBI ]
CGAP (NCI)Hs.121335
Alternative Splicing GalleryENSG00000144550
Gene ExpressionCPNE9 [ NCBI-GEO ]   CPNE9 [ EBI - ARRAY_EXPRESS ]   CPNE9 [ SEEK ]   CPNE9 [ MEM ]
Gene Expression Viewer (FireBrowse)CPNE9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151835
GTEX Portal (Tissue expression)CPNE9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYJ1
Splice isoforms : SwissVarQ8IYJ1
PhosPhoSitePlusQ8IYJ1
Domaine pattern : Prosite (Expaxy)C2 (PS50004)    VWFA (PS50234)   
Domains : Interpro (EBI)C2_dom    Copine    VWF_A   
Domain families : Pfam (Sanger)C2 (PF00168)    Copine (PF07002)   
Domain families : Pfam (NCBI)pfam00168    pfam07002   
Domain families : Smart (EMBL)C2 (SM00239)  VWA (SM00327)  
Conserved Domain (NCBI)CPNE9
DMDM Disease mutations151835
Blocks (Seattle)CPNE9
SuperfamilyQ8IYJ1
Human Protein AtlasENSG00000144550
Peptide AtlasQ8IYJ1
HPRD17307
IPIIPI00332395   IPI00180176   IPI00924678   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYJ1
IntAct (EBI)Q8IYJ1
FunCoupENSG00000144550
BioGRIDCPNE9
STRING (EMBL)CPNE9
ZODIACCPNE9
Ontologies - Pathways
QuickGOQ8IYJ1
Ontology : AmiGOextracellular space  extracellular exosome  positive regulation of dendrite extension  
Ontology : EGO-EBIextracellular space  extracellular exosome  positive regulation of dendrite extension  
NDEx NetworkCPNE9
Atlas of Cancer Signalling NetworkCPNE9
Wikipedia pathwaysCPNE9
Orthology - Evolution
OrthoDB151835
GeneTree (enSembl)ENSG00000144550
Phylogenetic Trees/Animal Genes : TreeFamCPNE9
HOVERGENQ8IYJ1
HOGENOMQ8IYJ1
Homologs : HomoloGeneCPNE9
Homology/Alignments : Family Browser (UCSC)CPNE9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPNE9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPNE9
dbVarCPNE9
ClinVarCPNE9
1000_GenomesCPNE9 
Exome Variant ServerCPNE9
ExAC (Exome Aggregation Consortium)CPNE9 (select the gene name)
Genetic variants : HAPMAP151835
Genomic Variants (DGV)CPNE9 [DGVbeta]
DECIPHERCPNE9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPNE9 
Mutations
ICGC Data PortalCPNE9 
TCGA Data PortalCPNE9 
Broad Tumor PortalCPNE9
OASIS PortalCPNE9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPNE9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPNE9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPNE9
DgiDB (Drug Gene Interaction Database)CPNE9
DoCM (Curated mutations)CPNE9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPNE9 (select a term)
intoGenCPNE9
Cancer3DCPNE9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCPNE9
Genetic Testing Registry CPNE9
NextProtQ8IYJ1 [Medical]
TSGene151835
GENETestsCPNE9
Target ValidationCPNE9
Huge Navigator CPNE9 [HugePedia]
snp3D : Map Gene to Disease151835
BioCentury BCIQCPNE9
ClinGenCPNE9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151835
Chemical/Pharm GKB GenePA142672082
Clinical trialCPNE9
Miscellaneous
canSAR (ICR)CPNE9 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPNE9
EVEXCPNE9
GoPubMedCPNE9
iHOPCPNE9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:26 CEST 2017

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