Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CPO (carboxypeptidase O)

Identity

Other alias-
HGNC (Hugo) CPO
LocusID (NCBI) 130749
Atlas_Id 62060
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 206939554 and ends at 206969474 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPO   21011
Cards
Entrez_Gene (NCBI)CPO  130749  carboxypeptidase O
Aliases
GeneCards (Weizmann)CPO
Ensembl hg19 (Hinxton)ENSG00000144410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144410 [Gene_View]  chr2:206939554-206969474 [Contig_View]  CPO [Vega]
ICGC DataPortalENSG00000144410
TCGA cBioPortalCPO
AceView (NCBI)CPO
Genatlas (Paris)CPO
WikiGenes130749
SOURCE (Princeton)CPO
Genetics Home Reference (NIH)CPO
Genomic and cartography
GoldenPath hg38 (UCSC)CPO  -     chr2:206939554-206969474 +  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPO  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblCPO - 2q33.3 [CytoView hg19]  CPO - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBICPO [Mapview hg19]  CPO [Mapview hg38]
OMIM609563   
Gene and transcription
Genbank (Entrez)AJ422118 BC112076 BC112078 BK000189
RefSeq transcript (Entrez)NM_173077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPO
Cluster EST : UnigeneHs.684103 [ NCBI ]
CGAP (NCI)Hs.684103
Alternative Splicing GalleryENSG00000144410
Gene ExpressionCPO [ NCBI-GEO ]   CPO [ EBI - ARRAY_EXPRESS ]   CPO [ SEEK ]   CPO [ MEM ]
Gene Expression Viewer (FireBrowse)CPO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130749
GTEX Portal (Tissue expression)CPO
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVL8
Splice isoforms : SwissVarQ8IVL8
PhosPhoSitePlusQ8IVL8
Domaine pattern : Prosite (Expaxy)CARBOXYPEPT_ZN_1 (PS00132)   
Domains : Interpro (EBI)Carboxypeptidase_O    Peptidase_M14   
Domain families : Pfam (Sanger)Peptidase_M14 (PF00246)   
Domain families : Pfam (NCBI)pfam00246   
Domain families : Smart (EMBL)Zn_pept (SM00631)  
Conserved Domain (NCBI)CPO
DMDM Disease mutations130749
Blocks (Seattle)CPO
SuperfamilyQ8IVL8
Human Protein AtlasENSG00000144410
Peptide AtlasQ8IVL8
HPRD07098
IPIIPI00220711   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVL8
IntAct (EBI)Q8IVL8
FunCoupENSG00000144410
BioGRIDCPO
STRING (EMBL)CPO
ZODIACCPO
Ontologies - Pathways
QuickGOQ8IVL8
Ontology : AmiGOmetallocarboxypeptidase activity  extracellular space  proteolysis  zinc ion binding  apical plasma membrane  anchored component of plasma membrane  
Ontology : EGO-EBImetallocarboxypeptidase activity  extracellular space  proteolysis  zinc ion binding  apical plasma membrane  anchored component of plasma membrane  
NDEx NetworkCPO
Atlas of Cancer Signalling NetworkCPO
Wikipedia pathwaysCPO
Orthology - Evolution
OrthoDB130749
GeneTree (enSembl)ENSG00000144410
Phylogenetic Trees/Animal Genes : TreeFamCPO
HOVERGENQ8IVL8
HOGENOMQ8IVL8
Homologs : HomoloGeneCPO
Homology/Alignments : Family Browser (UCSC)CPO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPO
dbVarCPO
ClinVarCPO
1000_GenomesCPO 
Exome Variant ServerCPO
ExAC (Exome Aggregation Consortium)CPO (select the gene name)
Genetic variants : HAPMAP130749
Genomic Variants (DGV)CPO [DGVbeta]
DECIPHERCPO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPO 
Mutations
ICGC Data PortalCPO 
TCGA Data PortalCPO 
Broad Tumor PortalCPO
OASIS PortalCPO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPO
DgiDB (Drug Gene Interaction Database)CPO
DoCM (Curated mutations)CPO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPO (select a term)
intoGenCPO
Cancer3DCPO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609563   
Orphanet
MedgenCPO
Genetic Testing Registry CPO
NextProtQ8IVL8 [Medical]
TSGene130749
GENETestsCPO
Target ValidationCPO
Huge Navigator CPO [HugePedia]
snp3D : Map Gene to Disease130749
BioCentury BCIQCPO
ClinGenCPO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130749
Chemical/Pharm GKB GenePA164741367
Clinical trialCPO
Miscellaneous
canSAR (ICR)CPO (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPO
EVEXCPO
GoPubMedCPO
iHOPCPO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:26 CEST 2017

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