Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CPPED1 (calcineurin like phosphoesterase domain containing 1)

Identity

Alias_namescalcineurin-like phosphoesterase domain containing 1
Alias_symbol (synonym)CSTP1
FLJ11151
Other alias
HGNC (Hugo) CPPED1
LocusID (NCBI) 55313
Atlas_Id 62061
Location 16p13.12  [Link to chromosome band 16p13]
Location_base_pair Starts at 12659799 and ends at 12803887 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CPPED1   25632
Cards
Entrez_Gene (NCBI)CPPED1  55313  calcineurin like phosphoesterase domain containing 1
AliasesCSTP1
GeneCards (Weizmann)CPPED1
Ensembl hg19 (Hinxton)ENSG00000103381 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103381 [Gene_View]  chr16:12659799-12803887 [Contig_View]  CPPED1 [Vega]
ICGC DataPortalENSG00000103381
TCGA cBioPortalCPPED1
AceView (NCBI)CPPED1
Genatlas (Paris)CPPED1
WikiGenes55313
SOURCE (Princeton)CPPED1
Genetics Home Reference (NIH)CPPED1
Genomic and cartography
GoldenPath hg38 (UCSC)CPPED1  -     chr16:12659799-12803887 -  16p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPPED1  -     16p13.12   [Description]    (hg19-Feb_2009)
EnsemblCPPED1 - 16p13.12 [CytoView hg19]  CPPED1 - 16p13.12 [CytoView hg38]
Mapping of homologs : NCBICPPED1 [Mapview hg19]  CPPED1 [Mapview hg38]
OMIM615603   
Gene and transcription
Genbank (Entrez)AK002013 AK022710 AK093854 AK225359 AK225617
RefSeq transcript (Entrez)NM_001099455 NM_018340
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPPED1
Cluster EST : UnigeneHs.460002 [ NCBI ]
CGAP (NCI)Hs.460002
Alternative Splicing GalleryENSG00000103381
Gene ExpressionCPPED1 [ NCBI-GEO ]   CPPED1 [ EBI - ARRAY_EXPRESS ]   CPPED1 [ SEEK ]   CPPED1 [ MEM ]
Gene Expression Viewer (FireBrowse)CPPED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55313
GTEX Portal (Tissue expression)CPPED1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRF8
Splice isoforms : SwissVarQ9BRF8
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ9BRF8
Domains : Interpro (EBI)Calcineurin-like_PHP_ApaH    Metallo-depent_PP-like   
Domain families : Pfam (Sanger)Metallophos (PF00149)   
Domain families : Pfam (NCBI)pfam00149   
Conserved Domain (NCBI)CPPED1
DMDM Disease mutations55313
Blocks (Seattle)CPPED1
SuperfamilyQ9BRF8
Human Protein AtlasENSG00000103381
Peptide AtlasQ9BRF8
HPRD07735
IPIIPI00305010   IPI00426077   IPI00909311   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRF8
IntAct (EBI)Q9BRF8
FunCoupENSG00000103381
BioGRIDCPPED1
STRING (EMBL)CPPED1
ZODIACCPPED1
Ontologies - Pathways
QuickGOQ9BRF8
Ontology : AmiGOphosphoprotein phosphatase activity  extracellular region  cytosol  plasma membrane  protein dephosphorylation  azurophil granule lumen  neutrophil degranulation  metal ion binding  extracellular exosome  
Ontology : EGO-EBIphosphoprotein phosphatase activity  extracellular region  cytosol  plasma membrane  protein dephosphorylation  azurophil granule lumen  neutrophil degranulation  metal ion binding  extracellular exosome  
NDEx NetworkCPPED1
Atlas of Cancer Signalling NetworkCPPED1
Wikipedia pathwaysCPPED1
Orthology - Evolution
OrthoDB55313
GeneTree (enSembl)ENSG00000103381
Phylogenetic Trees/Animal Genes : TreeFamCPPED1
HOVERGENQ9BRF8
HOGENOMQ9BRF8
Homologs : HomoloGeneCPPED1
Homology/Alignments : Family Browser (UCSC)CPPED1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPPED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPPED1
dbVarCPPED1
ClinVarCPPED1
1000_GenomesCPPED1 
Exome Variant ServerCPPED1
ExAC (Exome Aggregation Consortium)CPPED1 (select the gene name)
Genetic variants : HAPMAP55313
Genomic Variants (DGV)CPPED1 [DGVbeta]
DECIPHERCPPED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPPED1 
Mutations
ICGC Data PortalCPPED1 
TCGA Data PortalCPPED1 
Broad Tumor PortalCPPED1
OASIS PortalCPPED1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPPED1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPPED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPPED1
DgiDB (Drug Gene Interaction Database)CPPED1
DoCM (Curated mutations)CPPED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPPED1 (select a term)
intoGenCPPED1
Cancer3DCPPED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615603   
Orphanet
MedgenCPPED1
Genetic Testing Registry CPPED1
NextProtQ9BRF8 [Medical]
TSGene55313
GENETestsCPPED1
Target ValidationCPPED1
Huge Navigator CPPED1 [HugePedia]
snp3D : Map Gene to Disease55313
BioCentury BCIQCPPED1
ClinGenCPPED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55313
Chemical/Pharm GKB GenePA164718110
Clinical trialCPPED1
Miscellaneous
canSAR (ICR)CPPED1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPPED1
EVEXCPPED1
GoPubMedCPPED1
iHOPCPPED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:05:19 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.