Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CPQ (carboxypeptidase Q)

Identity

Alias_symbol (synonym)LDP
PGCP
Other alias
HGNC (Hugo) CPQ
LocusID (NCBI) 10404
Atlas_Id 54234
Location 8q22.1  [Link to chromosome band 8q22]
Location_base_pair Starts at 96645227 and ends at 97143503 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CPQ (8q22.1) / ERICH5 (8q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPQ   16910
Cards
Entrez_Gene (NCBI)CPQ  10404  carboxypeptidase Q
AliasesLDP; PGCP
GeneCards (Weizmann)CPQ
Ensembl hg19 (Hinxton)ENSG00000104324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104324 [Gene_View]  chr8:96645227-97143503 [Contig_View]  CPQ [Vega]
ICGC DataPortalENSG00000104324
TCGA cBioPortalCPQ
AceView (NCBI)CPQ
Genatlas (Paris)CPQ
WikiGenes10404
SOURCE (Princeton)CPQ
Genetics Home Reference (NIH)CPQ
Genomic and cartography
GoldenPath hg38 (UCSC)CPQ  -     chr8:96645227-97143503 +  8q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPQ  -     8q22.1   [Description]    (hg19-Feb_2009)
EnsemblCPQ - 8q22.1 [CytoView hg19]  CPQ - 8q22.1 [CytoView hg38]
Mapping of homologs : NCBICPQ [Mapview hg19]  CPQ [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA492294 AF107833 AF107834 AF119386 AK075132
RefSeq transcript (Entrez)NM_016134
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPQ
Cluster EST : UnigeneHs.156178 [ NCBI ]
CGAP (NCI)Hs.156178
Alternative Splicing GalleryENSG00000104324
Gene ExpressionCPQ [ NCBI-GEO ]   CPQ [ EBI - ARRAY_EXPRESS ]   CPQ [ SEEK ]   CPQ [ MEM ]
Gene Expression Viewer (FireBrowse)CPQ [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10404
GTEX Portal (Tissue expression)CPQ
Human Protein AtlasENSG00000104324-CPQ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y646   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y646  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y646
Splice isoforms : SwissVarQ9Y646
Catalytic activity : Enzyme3.4.17.- [ Enzyme-Expasy ]   3.4.17.-3.4.17.- [ IntEnz-EBI ]   3.4.17.- [ BRENDA ]   3.4.17.- [ KEGG ]   
PhosPhoSitePlusQ9Y646
Domains : Interpro (EBI)Peptidase_M28   
Domain families : Pfam (Sanger)Peptidase_M28 (PF04389)   
Domain families : Pfam (NCBI)pfam04389   
Conserved Domain (NCBI)CPQ
DMDM Disease mutations10404
Blocks (Seattle)CPQ
SuperfamilyQ9Y646
Human Protein Atlas [tissue]ENSG00000104324-CPQ [tissue]
Peptide AtlasQ9Y646
HPRD07140
IPIIPI00796411   IPI00005794   IPI00975768   IPI00981904   IPI00977683   IPI00983815   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y646
IntAct (EBI)Q9Y646
FunCoupENSG00000104324
BioGRIDCPQ
STRING (EMBL)CPQ
ZODIACCPQ
Ontologies - Pathways
QuickGOQ9Y646
Ontology : AmiGOcarboxypeptidase activity  extracellular space  cytoplasm  lysosome  endoplasmic reticulum  Golgi apparatus  proteolysis  thyroid hormone generation  thyroid hormone generation  tissue regeneration  protein homodimerization activity  peptide catabolic process  metal ion binding  extracellular exosome  metallodipeptidase activity  
Ontology : EGO-EBIcarboxypeptidase activity  extracellular space  cytoplasm  lysosome  endoplasmic reticulum  Golgi apparatus  proteolysis  thyroid hormone generation  thyroid hormone generation  tissue regeneration  protein homodimerization activity  peptide catabolic process  metal ion binding  extracellular exosome  metallodipeptidase activity  
NDEx NetworkCPQ
Atlas of Cancer Signalling NetworkCPQ
Wikipedia pathwaysCPQ
Orthology - Evolution
OrthoDB10404
GeneTree (enSembl)ENSG00000104324
Phylogenetic Trees/Animal Genes : TreeFamCPQ
HOVERGENQ9Y646
HOGENOMQ9Y646
Homologs : HomoloGeneCPQ
Homology/Alignments : Family Browser (UCSC)CPQ
Gene fusions - Rearrangements
Fusion : MitelmanCPQ/ERICH5 [8q22.1/8q22.2]  
Fusion : MitelmanGML/CPQ [8q24.3/8q22.1]  [t(8;8)(q22;q24)]  
Tumor Fusion PortalCPQ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPQ [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPQ
dbVarCPQ
ClinVarCPQ
1000_GenomesCPQ 
Exome Variant ServerCPQ
ExAC (Exome Aggregation Consortium)ENSG00000104324
GNOMAD BrowserENSG00000104324
Genetic variants : HAPMAP10404
Genomic Variants (DGV)CPQ [DGVbeta]
DECIPHERCPQ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPQ 
Mutations
ICGC Data PortalCPQ 
TCGA Data PortalCPQ 
Broad Tumor PortalCPQ
OASIS PortalCPQ [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCPQ
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPQ
DgiDB (Drug Gene Interaction Database)CPQ
DoCM (Curated mutations)CPQ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPQ (select a term)
intoGenCPQ
Cancer3DCPQ(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCPQ
MedgenCPQ
Genetic Testing Registry CPQ
NextProtQ9Y646 [Medical]
TSGene10404
GENETestsCPQ
Target ValidationCPQ
Huge Navigator CPQ [HugePedia]
snp3D : Map Gene to Disease10404
BioCentury BCIQCPQ
ClinGenCPQ
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10404
Chemical/Pharm GKB GenePA166048947
Clinical trialCPQ
Miscellaneous
canSAR (ICR)CPQ (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPQ
EVEXCPQ
GoPubMedCPQ
iHOPCPQ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:08:51 CET 2017

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