Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CPS1-IT1 (CPS1 intronic transcript 1)

Identity

Alias_namesCPS1IT
CPS1 intronic transcript 1 (non-protein coding)
Alias_symbol (synonym)PRO0132
CPS1-IT
Other aliasCPS1IT1
HGNC (Hugo) CPS1-IT1
LocusID (NCBI) 29034
Atlas_Id 62062
Location 2q34  [Link to chromosome band 2q34]
Location_base_pair Starts at 210617571 and ends at 210619875 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPS1-IT1   30102
Cards
Entrez_Gene (NCBI)CPS1-IT1  29034  CPS1 intronic transcript 1
AliasesCPS1-IT; CPS1IT; CPS1IT1; PRO0132
GeneCards (Weizmann)CPS1-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:210617571-210619875 [Contig_View]  CPS1-IT1 [Vega]
TCGA cBioPortalCPS1-IT1
AceView (NCBI)CPS1-IT1
Genatlas (Paris)CPS1-IT1
WikiGenes29034
SOURCE (Princeton)CPS1-IT1
Genetics Home Reference (NIH)CPS1-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)CPS1-IT1  -     chr2:210617571-210619875 +  2q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPS1-IT1  -     2q34   [Description]    (hg19-Feb_2009)
EnsemblCPS1-IT1 - 2q34 [CytoView hg19]  CPS1-IT1 - 2q34 [CytoView hg38]
Mapping of homologs : NCBICPS1-IT1 [Mapview hg19]  CPS1-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF090897 BC020670
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPS1-IT1
Cluster EST : UnigeneHs.658398 [ NCBI ]
CGAP (NCI)Hs.658398
Gene ExpressionCPS1-IT1 [ NCBI-GEO ]   CPS1-IT1 [ EBI - ARRAY_EXPRESS ]   CPS1-IT1 [ SEEK ]   CPS1-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CPS1-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)29034
GTEX Portal (Tissue expression)CPS1-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CPS1-IT1
DMDM Disease mutations29034
Blocks (Seattle)CPS1-IT1
IPIIPI00022957   
Protein Interaction databases
BioGRIDCPS1-IT1
STRING (EMBL)CPS1-IT1
ZODIACCPS1-IT1
Ontologies - Pathways
Huge Navigator CPS1-IT1 [HugePedia]
snp3D : Map Gene to Disease29034
BioCentury BCIQCPS1-IT1
ClinGenCPS1-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29034
Chemical/Pharm GKB GenePA165696455
Clinical trialCPS1-IT1
Miscellaneous
canSAR (ICR)CPS1-IT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPS1-IT1
EVEXCPS1-IT1
GoPubMedCPS1-IT1
iHOPCPS1-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:18 CET 2017

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