Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CPSF4L (cleavage and polyadenylation specific factor 4 like)

Identity

Other alias-
HGNC (Hugo) CPSF4L
LocusID (NCBI) 642843
Atlas_Id 62064
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 73248449 and ends at 73261880 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPSF4L   33632
Cards
Entrez_Gene (NCBI)CPSF4L  642843  cleavage and polyadenylation specific factor 4 like
Aliases
GeneCards (Weizmann)CPSF4L
Ensembl hg19 (Hinxton)ENSG00000187959 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187959 [Gene_View]  chr17:73248449-73261880 [Contig_View]  CPSF4L [Vega]
ICGC DataPortalENSG00000187959
TCGA cBioPortalCPSF4L
AceView (NCBI)CPSF4L
Genatlas (Paris)CPSF4L
WikiGenes642843
SOURCE (Princeton)CPSF4L
Genetics Home Reference (NIH)CPSF4L
Genomic and cartography
GoldenPath hg38 (UCSC)CPSF4L  -     chr17:73248449-73261880 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPSF4L  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblCPSF4L - 17q25.1 [CytoView hg19]  CPSF4L - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBICPSF4L [Mapview hg19]  CPSF4L [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC157870
RefSeq transcript (Entrez)NM_001129885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPSF4L
Cluster EST : UnigeneHs.534707 [ NCBI ]
CGAP (NCI)Hs.534707
Alternative Splicing GalleryENSG00000187959
Gene ExpressionCPSF4L [ NCBI-GEO ]   CPSF4L [ EBI - ARRAY_EXPRESS ]   CPSF4L [ SEEK ]   CPSF4L [ MEM ]
Gene Expression Viewer (FireBrowse)CPSF4L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642843
GTEX Portal (Tissue expression)CPSF4L
Human Protein AtlasENSG00000187959-CPSF4L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NMK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NMK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NMK7
Splice isoforms : SwissVarA6NMK7
PhosPhoSitePlusA6NMK7
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)CPSF4L
DMDM Disease mutations642843
Blocks (Seattle)CPSF4L
SuperfamilyA6NMK7
Human Protein Atlas [tissue]ENSG00000187959-CPSF4L [tissue]
Peptide AtlasA6NMK7
IPIIPI00376104   
Protein Interaction databases
DIP (DOE-UCLA)A6NMK7
IntAct (EBI)A6NMK7
FunCoupENSG00000187959
BioGRIDCPSF4L
STRING (EMBL)CPSF4L
ZODIACCPSF4L
Ontologies - Pathways
QuickGOA6NMK7
Ontology : AmiGORNA binding  endoribonuclease activity  mRNA cleavage and polyadenylation specificity factor complex  mRNA polyadenylation  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  pre-mRNA cleavage required for polyadenylation  
Ontology : EGO-EBIRNA binding  endoribonuclease activity  mRNA cleavage and polyadenylation specificity factor complex  mRNA polyadenylation  metal ion binding  RNA phosphodiester bond hydrolysis, endonucleolytic  pre-mRNA cleavage required for polyadenylation  
NDEx NetworkCPSF4L
Atlas of Cancer Signalling NetworkCPSF4L
Wikipedia pathwaysCPSF4L
Orthology - Evolution
OrthoDB642843
GeneTree (enSembl)ENSG00000187959
Phylogenetic Trees/Animal Genes : TreeFamCPSF4L
HOVERGENA6NMK7
HOGENOMA6NMK7
Homologs : HomoloGeneCPSF4L
Homology/Alignments : Family Browser (UCSC)CPSF4L
Gene fusions - Rearrangements
Tumor Fusion PortalCPSF4L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPSF4L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPSF4L
dbVarCPSF4L
ClinVarCPSF4L
1000_GenomesCPSF4L 
Exome Variant ServerCPSF4L
ExAC (Exome Aggregation Consortium)ENSG00000187959
GNOMAD BrowserENSG00000187959
Genetic variants : HAPMAP642843
Genomic Variants (DGV)CPSF4L [DGVbeta]
DECIPHERCPSF4L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPSF4L 
Mutations
ICGC Data PortalCPSF4L 
TCGA Data PortalCPSF4L 
Broad Tumor PortalCPSF4L
OASIS PortalCPSF4L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPSF4L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPSF4L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CPSF4L
DgiDB (Drug Gene Interaction Database)CPSF4L
DoCM (Curated mutations)CPSF4L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPSF4L (select a term)
intoGenCPSF4L
Cancer3DCPSF4L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCPSF4L
MedgenCPSF4L
Genetic Testing Registry CPSF4L
NextProtA6NMK7 [Medical]
TSGene642843
GENETestsCPSF4L
Target ValidationCPSF4L
Huge Navigator CPSF4L [HugePedia]
snp3D : Map Gene to Disease642843
BioCentury BCIQCPSF4L
ClinGenCPSF4L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642843
Chemical/Pharm GKB GenePA162382768
Clinical trialCPSF4L
Miscellaneous
canSAR (ICR)CPSF4L (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPSF4L
EVEXCPSF4L
GoPubMedCPSF4L
iHOPCPSF4L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:35:14 CET 2017

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