Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CPT1A (carnitine palmitoyltransferase 1A)

Identity

Other namesCPT1
CPT1-L
L-CPT1
HGNC (Hugo) CPT1A
LocusID (NCBI) 1374
Atlas_Id 50088
Location 11q13.3  [Link to chromosome band 11q13]
Location_base_pair Starts at 68522088 and ends at 68609399 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)		CPT1A (11q13.3) / ADAM2 (8p11.22)CPT1A (11q13.3) / ANPEP (15q26.1)CPT1A (11q13.3) / C16orf72 (16p13.2)
CPT1A (11q13.3) / FGF3 (11q13.3)CPT1A (11q13.3) / FGG (4q31.3)CPT1A (11q13.3) / GAPDH (12p13.31)
CPT1A (11q13.3) / KCNG1 (20q13.13)CPT1A (11q13.3) / RDH5 (12q13.2)FCHSD2 (11q13.4) / CPT1A (11q13.3)
SHANK2 (11q13.3) / CPT1A (11q13.3)CPT1A 11q13.3 / ADAM2 8p11.22CPT1A 11q13.3 / ANPEP 15q26.1
CPT1A 11q13.3 / FGF3 11q13.3CPT1A 11q13.3 / KCNG1 20q13.13FCHSD2 11q13.4 / CPT1A 11q13.3
SHANK2 11q13.3 / CPT1A 11q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CPT1A   2328
Cards
Entrez_Gene (NCBI)CPT1A  1374  carnitine palmitoyltransferase 1A
AliasesCPT1; CPT1-L; L-CPT1
GeneCards (Weizmann)CPT1A
Ensembl hg19 (Hinxton)ENSG00000110090 [Gene_View]  chr11:68522088-68609399 [Contig_View]  CPT1A [Vega]
Ensembl hg38 (Hinxton)ENSG00000110090 [Gene_View]  chr11:68522088-68609399 [Contig_View]  CPT1A [Vega]
ICGC DataPortalENSG00000110090
TCGA cBioPortalCPT1A
AceView (NCBI)CPT1A
Genatlas (Paris)CPT1A
WikiGenes1374
SOURCE (Princeton)CPT1A
Genomic and cartography
GoldenPath hg19 (UCSC)CPT1A  -     chr11:68522088-68609399 -  11q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPT1A  -     11q13.3   [Description]    (hg38-Dec_2013)
EnsemblCPT1A - 11q13.3 [CytoView hg19]  CPT1A - 11q13.3 [CytoView hg38]
Mapping of homologs : NCBICPT1A [Mapview hg19]  CPT1A [Mapview hg38]
OMIM255120   600528   
Gene and transcription
Genbank (Entrez)AA632225 AJ420378 AK025307 AK172798 AK309464
RefSeq transcript (Entrez)NM_001031847 NM_001876
RefSeq genomic (Entrez)NC_000011 NC_018922 NG_011801 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)CPT1A
Cluster EST : UnigeneHs.503043 [ NCBI ]
CGAP (NCI)Hs.503043
Alternative Splicing GalleryENSG00000110090
Gene ExpressionCPT1A [ NCBI-GEO ]   CPT1A [ EBI - ARRAY_EXPRESS ]   CPT1A [ SEEK ]   CPT1A [ MEM ]
Gene Expression Viewer (FireBrowse)CPT1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1374
GTEX Portal (Tissue expression)CPT1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50416 (Uniprot)
NextProtP50416  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50416
Splice isoforms : SwissVarP50416 (Swissvar)
Catalytic activity : Enzyme2.3.1.21 [ Enzyme-Expasy ]   2.3.1.212.3.1.21 [ IntEnz-EBI ]   2.3.1.21 [ BRENDA ]   2.3.1.21 [ KEGG ]   
PhosPhoSitePlusP50416
Domaine pattern : Prosite (Expaxy)ACYLTRANSF_C_1 (PS00439)    ACYLTRANSF_C_2 (PS00440)   
Domains : Interpro (EBI)Carn_acyl_trans    CPT_N   
Domain families : Pfam (Sanger)Carn_acyltransf (PF00755)    CPT_N (PF16484)   
Domain families : Pfam (NCBI)pfam00755    pfam16484   
DMDM Disease mutations1374
Blocks (Seattle)CPT1A
PDB (SRS)2LE3   
PDB (PDBSum)2LE3   
PDB (IMB)2LE3   
PDB (RSDB)2LE3   
Structural Biology KnowledgeBase2LE3   
SCOP (Structural Classification of Proteins)2LE3   
CATH (Classification of proteins structures)2LE3   
SuperfamilyP50416
Human Protein AtlasENSG00000110090
Peptide AtlasP50416
HPRD02755
IPIIPI00032038   IPI00479108   
Protein Interaction databases
DIP (DOE-UCLA)P50416
IntAct (EBI)P50416
FunCoupENSG00000110090
BioGRIDCPT1A
STRING (EMBL)CPT1A
ZODIACCPT1A
Ontologies - Pathways
QuickGOP50416
Ontology : AmiGOlong-chain fatty acid metabolic process  carnitine O-palmitoyltransferase activity  carnitine O-palmitoyltransferase activity  mitochondrion  mitochondrial outer membrane  mitochondrial inner membrane  glucose metabolic process  fatty acid beta-oxidation  triglyceride metabolic process  carnitine shuttle  circadian rhythm  carnitine metabolic process  response to organic cyclic compound  membrane  epithelial cell differentiation  integral component of mitochondrial outer membrane  positive regulation of fatty acid beta-oxidation  response to drug  eating behavior  identical protein binding  regulation of insulin secretion  protein homooligomerization  cellular response to fatty acid  palmitoleoyltransferase activity  
Ontology : EGO-EBIlong-chain fatty acid metabolic process  carnitine O-palmitoyltransferase activity  carnitine O-palmitoyltransferase activity  mitochondrion  mitochondrial outer membrane  mitochondrial inner membrane  glucose metabolic process  fatty acid beta-oxidation  triglyceride metabolic process  carnitine shuttle  circadian rhythm  carnitine metabolic process  response to organic cyclic compound  membrane  epithelial cell differentiation  integral component of mitochondrial outer membrane  positive regulation of fatty acid beta-oxidation  response to drug  eating behavior  identical protein binding  regulation of insulin secretion  protein homooligomerization  cellular response to fatty acid  palmitoleoyltransferase activity  
Pathways : BIOCARTAReversal of Insulin Resistance by Leptin [Genes]    Mitochondrial Carnitine Palmitoyltransferase (CPT) System [Genes]   
Pathways : KEGGFatty acid degradation    PPAR signaling pathway    Adipocytokine signaling pathway   
NDEx NetworkCPT1A
Atlas of Cancer Signalling NetworkCPT1A
Wikipedia pathwaysCPT1A
Orthology - Evolution
OrthoDB1374
GeneTree (enSembl)ENSG00000110090
Phylogenetic Trees/Animal Genes : TreeFamCPT1A
Homologs : HomoloGeneCPT1A
Homology/Alignments : Family Browser (UCSC)CPT1A
Gene fusions - Rearrangements
Fusion: TCGACPT1A 11q13.3 ADAM2 8p11.22 BRCA
Fusion: TCGACPT1A 11q13.3 ANPEP 15q26.1 KIRC
Fusion: TCGACPT1A 11q13.3 FGF3 11q13.3 HNSC
Fusion: TCGACPT1A 11q13.3 KCNG1 20q13.13 BRCA
Fusion: TCGAFCHSD2 11q13.4 CPT1A 11q13.3 BRCA
Fusion: TCGASHANK2 11q13.3 CPT1A 11q13.3 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerCPT1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPT1A
dbVarCPT1A
ClinVarCPT1A
1000_GenomesCPT1A 
Exome Variant ServerCPT1A
ExAC (Exome Aggregation Consortium)CPT1A (select the gene name)
Genetic variants : HAPMAP1374
Genomic Variants (DGV)CPT1A [DGVbeta]
Mutations
ICGC Data PortalCPT1A 
TCGA Data PortalCPT1A 
Broad Tumor PortalCPT1A
OASIS PortalCPT1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPT1A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CPT1A
DgiDB (Drug Gene Interaction Database)CPT1A
DoCM (Curated mutations)CPT1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPT1A (select a term)
intoGenCPT1A
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:68522088-68609399  ENSG00000110090
CONAN: Copy Number AnalysisCPT1A 
Mutations and Diseases : HGMDCPT1A
OMIM255120    600528   
MedgenCPT1A
Genetic Testing Registry CPT1A
NextProtP50416 [Medical]
TSGene1374
GENETestsCPT1A
Huge Navigator CPT1A [HugePedia]
snp3D : Map Gene to Disease1374
BioCentury BCIQCPT1A
ClinGenCPT1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1374
Chemical/Pharm GKB GenePA26847
Clinical trialCPT1A
Miscellaneous
canSAR (ICR)CPT1A (select the gene name)
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPT1A
EVEXCPT1A
GoPubMedCPT1A
iHOPCPT1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:43:53 CEST 2016
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