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CPT2 (carnitine palmitoyltransferase 2)

Identity

Other namesCPT1
CPTASE
IIAE4
HGNC (Hugo) CPT2
LocusID (NCBI) 1376
Atlas_Id 50150
Location 1p32.3
Location_base_pair Starts at 53662101 and ends at 53679869 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
CPT2 1p32.3 / SCP2 1p32.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPT2   2330
Cards
Entrez_Gene (NCBI)CPT2  1376  carnitine palmitoyltransferase 2
GeneCards (Weizmann)CPT2
Ensembl hg19 (Hinxton)ENSG00000157184 [Gene_View]  chr1:53662101-53679869 [Contig_View]  CPT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157184 [Gene_View]  chr1:53662101-53679869 [Contig_View]  CPT2 [Vega]
ICGC DataPortalENSG00000157184
TCGA cBioPortalCPT2
AceView (NCBI)CPT2
Genatlas (Paris)CPT2
WikiGenes1376
SOURCE (Princeton)CPT2
Genomic and cartography
GoldenPath hg19 (UCSC)CPT2  -     chr1:53662101-53679869 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPT2  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblCPT2 - 1p32.3 [CytoView hg19]  CPT2 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBICPT2 [Mapview hg19]  CPT2 [Mapview hg38]
OMIM255110   600649   600650   608836   614212   
Gene and transcription
Genbank (Entrez)AK223052 AK312687 BC002445 BC005172 BU629852
RefSeq transcript (Entrez)NM_000098
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008035 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)CPT2
Cluster EST : UnigeneHs.713535 [ NCBI ]
CGAP (NCI)Hs.713535
Alternative Splicing : Fast-db (Paris)GSHG0000521
Alternative Splicing GalleryENSG00000157184
Gene ExpressionCPT2 [ NCBI-GEO ]     CPT2 [ SEEK ]   CPT2 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)1376
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23786 (Uniprot)
NextProtP23786  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23786
Splice isoforms : SwissVarP23786 (Swissvar)
Catalytic activity : Enzyme2.3.1.21 [ Enzyme-Expasy ]   2.3.1.21 [ Enzyme-SRS ]   2.3.1.21 [ IntEnz-EBI ]   2.3.1.21 [ PRIAM ]   2.3.1.21 [ BRENDA ]   2.3.1.21 [ KEGG ]   2.3.1.21 [ IUBMB ]
PhosPhoSitePlusP23786
Domaine pattern : Prosite (Expaxy)ACYLTRANSF_C_1 (PS00439)    ACYLTRANSF_C_2 (PS00440)   
Domains : Interpro (EBI)Carn_acyl_trans   
Domain families : Pfam (Sanger)Carn_acyltransf (PF00755)   
Domain families : Pfam (NCBI)pfam00755   
DMDM Disease mutations1376
Blocks (Seattle)CPT2
Human Protein AtlasENSG00000157184
Peptide AtlasP23786
HPRD02802
IPIIPI00012912   
Protein Interaction databases
DIP (DOE-UCLA)P23786
IntAct (EBI)P23786
FunCoupENSG00000157184
BioGRIDCPT2
IntegromeDBCPT2
STRING (EMBL)CPT2
ZODIACCPT2
Ontologies - Pathways
QuickGOP23786
Ontology : AmiGOcarnitine O-palmitoyltransferase activity  nucleoplasm  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  fatty acid beta-oxidation  carnitine shuttle  cellular lipid metabolic process  small molecule metabolic process  
Ontology : EGO-EBIcarnitine O-palmitoyltransferase activity  nucleoplasm  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  fatty acid beta-oxidation  carnitine shuttle  cellular lipid metabolic process  small molecule metabolic process  
Pathways : BIOCARTAMitochondrial Carnitine Palmitoyltransferase (CPT) System [Genes]   
Pathways : KEGGFatty acid degradation    PPAR signaling pathway   
Protein Interaction DatabaseCPT2
Atlas of Cancer Signalling NetworkCPT2
Wikipedia pathwaysCPT2
Orthology - Evolution
OrthoDB1376
GeneTree (enSembl)ENSG00000157184
Phylogenetic Trees/Animal Genes : TreeFamCPT2
Homologs : HomoloGeneCPT2
Homology/Alignments : Family Browser (UCSC)CPT2
Gene fusions - Rearrangements
Fusion: TCGACPT2 1p32.3 SCP2 1p32.3 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerCPT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPT2
dbVarCPT2
ClinVarCPT2
1000_GenomesCPT2 
Exome Variant ServerCPT2
Exome Aggregation Consortium (ExAC)ENSG00000157184
SNP (GeneSNP Utah)CPT2
SNP : HGBaseCPT2
Genetic variants : HAPMAPCPT2
Genomic Variants (DGV)CPT2 [DGVbeta]
Mutations
ICGC Data PortalCPT2 
TCGA Data PortalCPT2 
Tumor PortalCPT2
TCGA Copy Number PortalCPT2
Somatic Mutations in Cancer : COSMICCPT2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CPT2
DgiDB (Drug Gene Interaction Database)CPT2
DoCM (Curated mutations)CPT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPT2 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:53662101-53679869
CONAN: Copy Number AnalysisCPT2 
Mutations and Diseases : HGMDCPT2
OMIM255110    600649    600650    608836    614212   
MedgenCPT2
NextProtP23786 [Medical]
TSGene1376
GENETestsCPT2
Huge Navigator CPT2 [HugePedia]  CPT2 [HugeCancerGEM]
snp3D : Map Gene to Disease1376
BioCentury BCIQCPT2
General knowledge
Chemical/Protein Interactions : CTD1376
Chemical/Pharm GKB GenePA26849
Clinical trialCPT2
Other databases
Probes
Litterature
PubMed80 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPT2
GoPubMedCPT2
iHOPCPT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:23:33 CET 2016

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