Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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CPT2 (carnitine palmitoyltransferase 2)


Other namesCPT1
HGNC (Hugo) CPT2
LocusID (NCBI) 1376
Location 1p32.3
Location_base_pair Starts at 53662101 and ends at 53679869 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)CPT2   2330
Entrez_Gene (NCBI)CPT2  1376  carnitine palmitoyltransferase 2
GeneCards (Weizmann)CPT2
Ensembl hg19 (Hinxton)ENSG00000157184 [Gene_View]  chr1:53662101-53679869 [Contig_View]  CPT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000157184 [Gene_View]  chr1:53662101-53679869 [Contig_View]  CPT2 [Vega]
ICGC DataPortalENSG00000157184
AceView (NCBI)CPT2
Genatlas (Paris)CPT2
SOURCE (Princeton)CPT2
Genomic and cartography
GoldenPath hg19 (UCSC)CPT2  -     chr1:53662101-53679869 +  1p32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CPT2  -     1p32.3   [Description]    (hg38-Dec_2013)
EnsemblCPT2 - 1p32.3 [CytoView hg19]  CPT2 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBICPT2 [Mapview hg19]  CPT2 [Mapview hg38]
OMIM255110   600649   600650   608836   614212   
Gene and transcription
Genbank (Entrez)AK223052 AK312687 BC002445 BC005172 BU629852
RefSeq transcript (Entrez)NM_000098
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008035 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)CPT2
Cluster EST : UnigeneHs.713535 [ NCBI ]
CGAP (NCI)Hs.713535
Alternative Splicing : Fast-db (Paris)GSHG0000521
Alternative Splicing GalleryENSG00000157184
Gene ExpressionCPT2 [ NCBI-GEO ]     CPT2 [ SEEK ]   CPT2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23786 (Uniprot)
NextProtP23786  [Medical]
With graphics : InterProP23786
Splice isoforms : SwissVarP23786 (Swissvar)
Catalytic activity : Enzyme2.3.1.21 [ Enzyme-Expasy ] [ IntEnz-EBI ] [ BRENDA ] [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ACYLTRANSF_C_1 (PS00439)    ACYLTRANSF_C_2 (PS00440)   
Domains : Interpro (EBI)Carn_acyl_trans   
Related proteins : CluSTrP23786
Domain families : Pfam (Sanger)Carn_acyltransf (PF00755)   
Domain families : Pfam (NCBI)pfam00755   
DMDM Disease mutations1376
Blocks (Seattle)P23786
Human Protein AtlasENSG00000157184
Peptide AtlasP23786
Protein Interaction databases
IntAct (EBI)P23786
Ontologies - Pathways
Ontology : AmiGOcarnitine O-palmitoyltransferase activity  nucleoplasm  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  fatty acid beta-oxidation  carnitine shuttle  cellular lipid metabolic process  small molecule metabolic process  
Ontology : EGO-EBIcarnitine O-palmitoyltransferase activity  nucleoplasm  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  fatty acid beta-oxidation  carnitine shuttle  cellular lipid metabolic process  small molecule metabolic process  
Pathways : BIOCARTAMitochondrial Carnitine Palmitoyltransferase (CPT) System [Genes]   
Pathways : KEGGFatty acid degradation    PPAR signaling pathway   
Protein Interaction DatabaseCPT2
DoCM (Curated mutations)CPT2
Wikipedia pathwaysCPT2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCPT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPT2
Exome Variant ServerCPT2
SNP (GeneSNP Utah)CPT2
Genetic variants : HAPMAPCPT2
Genomic Variants (DGV)CPT2 [DGVbeta]
ICGC Data PortalENSG00000157184 
Somatic Mutations in Cancer : COSMICCPT2 
CONAN: Copy Number AnalysisCPT2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)1:53662101-53679869
Mutations and Diseases : HGMDCPT2
OMIM255110    600649    600650    608836    614212   
NextProtP23786 [Medical]
Disease Genetic AssociationCPT2
Huge Navigator CPT2 [HugePedia]  CPT2 [HugeCancerGEM]
snp3D : Map Gene to Disease1376
DGIdb (Drug Gene Interaction db)CPT2
General knowledge
Homologs : HomoloGeneCPT2
Homology/Alignments : Family Browser (UCSC)CPT2
Phylogenetic Trees/Animal Genes : TreeFamCPT2
Chemical/Protein Interactions : CTD1376
Chemical/Pharm GKB GenePA26849
Clinical trialCPT2
Cancer Resource (Charite)ENSG00000157184
Other databases
PubMed76 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:06:38 CET 2015

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