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CPT2 (carnitine palmitoyltransferase 2)

Identity

Other namesCPT1
CPTASE
IIAE4
HGNC (Hugo) CPT2
LocusID (NCBI) 1376
Location 1p32.3
Location_base_pair Starts at 53662101 and ends at 53679869 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CPT2   2330
Cards
Entrez_Gene (NCBI)CPT2  1376  carnitine palmitoyltransferase 2
GeneCards (Weizmann)CPT2
Ensembl (Hinxton)ENSG00000157184 [Gene_View]  chr1:53662101-53679869 [Contig_View]  CPT2 [Vega]
ICGC DataPortalENSG00000157184
AceView (NCBI)CPT2
Genatlas (Paris)CPT2
WikiGenes1376
SOURCE (Princeton)NM_000098
Genomic and cartography
GoldenPath (UCSC)CPT2  -  1p32.3   chr1:53662101-53679869 +  1p32.3   [Description]    (hg19-Feb_2009)
EnsemblCPT2 - 1p32.3 [CytoView]
Mapping of homologs : NCBICPT2 [Mapview]
OMIM255110   600649   600650   608836   614212   
Gene and transcription
Genbank (Entrez)AK223052 AK312687 BC002445 BC005172 BU629852
RefSeq transcript (Entrez)NM_000098
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_008035 NT_032977 NW_001838579 NW_004929290
Consensus coding sequences : CCDS (NCBI)CPT2
Cluster EST : UnigeneHs.713535 [ NCBI ]
CGAP (NCI)Hs.713535
Alternative Splicing : Fast-db (Paris)GSHG0000521
Alternative Splicing GalleryENSG00000157184
Gene ExpressionCPT2 [ NCBI-GEO ]     CPT2 [ SEEK ]   CPT2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23786 (Uniprot)
NextProtP23786  [Medical]
With graphics : InterProP23786
Splice isoforms : SwissVarP23786 (Swissvar)
Catalytic activity : Enzyme2.3.1.21 [ Enzyme-Expasy ]   2.3.1.212.3.1.21 [ IntEnz-EBI ]   2.3.1.21 [ BRENDA ]   2.3.1.21 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ACYLTRANSF_C_1 (PS00439)    ACYLTRANSF_C_2 (PS00440)   
Domains : Interpro (EBI)Carn_acyl_trans   
Related proteins : CluSTrP23786
Domain families : Pfam (Sanger)Carn_acyltransf (PF00755)   
Domain families : Pfam (NCBI)pfam00755   
DMDM Disease mutations1376
Blocks (Seattle)P23786
Human Protein AtlasENSG00000157184
Peptide AtlasP23786
HPRD02802
IPIIPI00012912   
Protein Interaction databases
DIP (DOE-UCLA)P23786
IntAct (EBI)P23786
FunCoupENSG00000157184
BioGRIDCPT2
IntegromeDBCPT2
STRING (EMBL)CPT2
Ontologies - Pathways
QuickGOP23786
Ontology : AmiGOcarnitine O-palmitoyltransferase activity  nucleus  nucleolus  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  fatty acid beta-oxidation  carnitine shuttle  cellular lipid metabolic process  small molecule metabolic process  
Ontology : EGO-EBIcarnitine O-palmitoyltransferase activity  nucleus  nucleolus  nucleolus  mitochondrion  mitochondrial inner membrane  mitochondrial inner membrane  fatty acid beta-oxidation  carnitine shuttle  cellular lipid metabolic process  small molecule metabolic process  
Pathways : BIOCARTAMitochondrial Carnitine Palmitoyltransferase (CPT) System [Genes]   
Pathways : KEGGFatty acid degradation    PPAR signaling pathway   
Protein Interaction DatabaseCPT2
Wikipedia pathwaysCPT2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CPT2
SNP (GeneSNP Utah)CPT2
SNP : HGBaseCPT2
Genetic variants : HAPMAPCPT2
1000_GenomesCPT2 
ICGC programENSG00000157184 
CONAN: Copy Number AnalysisCPT2 
Somatic Mutations in Cancer : COSMICCPT2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
DECIPHER (Syndromes)1:53662101-53679869
Mutations and Diseases : HGMDCPT2
OMIM255110    600649    600650    608836    614212   
MedgenCPT2
GENETestsCPT2
Disease Genetic AssociationCPT2
Huge Navigator CPT2 [HugePedia]  CPT2 [HugeCancerGEM]
Genomic VariantsCPT2  CPT2 [DGVbeta]
Exome VariantCPT2
dbVarCPT2
ClinVarCPT2
snp3D : Map Gene to Disease1376
General knowledge
Homologs : HomoloGeneCPT2
Homology/Alignments : Family Browser (UCSC)CPT2
Phylogenetic Trees/Animal Genes : TreeFamCPT2
Chemical/Protein Interactions : CTD1376
Chemical/Pharm GKB GenePA26849
Clinical trialCPT2
Cancer Resource (Charite)ENSG00000157184
Other databases
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
CoreMineCPT2
GoPubMedCPT2
iHOPCPT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:19:50 CET 2014

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