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CPTP (ceramide-1-phosphate transfer protein)

Identity

Alias_namesGLTPD1
glycolipid transfer protein domain containing 1
Alias_symbol (synonym)MGC10334
Other alias
HGNC (Hugo) CPTP
LocusID (NCBI) 80772
Atlas_Id 62068
Location 1p36.33  [Link to chromosome band 1p36]
Location_base_pair Starts at 1324763 and ends at 1328896 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPTP   28116
Cards
Entrez_Gene (NCBI)CPTP  80772  ceramide-1-phosphate transfer protein
AliasesGLTPD1
GeneCards (Weizmann)CPTP
Ensembl hg19 (Hinxton)ENSG00000224051 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224051 [Gene_View]  chr1:1324763-1328896 [Contig_View]  CPTP [Vega]
ICGC DataPortalENSG00000224051
TCGA cBioPortalCPTP
AceView (NCBI)CPTP
Genatlas (Paris)CPTP
WikiGenes80772
SOURCE (Princeton)CPTP
Genetics Home Reference (NIH)CPTP
Genomic and cartography
GoldenPath hg38 (UCSC)CPTP  -     chr1:1324763-1328896 +  1p36.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPTP  -     1p36.33   [Description]    (hg19-Feb_2009)
EnsemblCPTP - 1p36.33 [CytoView hg19]  CPTP - 1p36.33 [CytoView hg38]
Mapping of homologs : NCBICPTP [Mapview hg19]  CPTP [Mapview hg38]
OMIM615467   
Gene and transcription
Genbank (Entrez)AL122073 BC004366 BC072454 BC098429 JN542538
RefSeq transcript (Entrez)NM_001029885
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPTP
Cluster EST : UnigeneHs.515689 [ NCBI ]
CGAP (NCI)Hs.515689
Alternative Splicing GalleryENSG00000224051
Gene ExpressionCPTP [ NCBI-GEO ]   CPTP [ EBI - ARRAY_EXPRESS ]   CPTP [ SEEK ]   CPTP [ MEM ]
Gene Expression Viewer (FireBrowse)CPTP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80772
GTEX Portal (Tissue expression)CPTP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TA50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TA50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TA50
Splice isoforms : SwissVarQ5TA50
PhosPhoSitePlusQ5TA50
Domains : Interpro (EBI)Glycolipid_transfer_prot_dom   
Domain families : Pfam (Sanger)GLTP (PF08718)   
Domain families : Pfam (NCBI)pfam08718   
Conserved Domain (NCBI)CPTP
DMDM Disease mutations80772
Blocks (Seattle)CPTP
PDB (SRS)4K80    4K84    4K85    4K8N    4KBS    4KF6   
PDB (PDBSum)4K80    4K84    4K85    4K8N    4KBS    4KF6   
PDB (IMB)4K80    4K84    4K85    4K8N    4KBS    4KF6   
PDB (RSDB)4K80    4K84    4K85    4K8N    4KBS    4KF6   
Structural Biology KnowledgeBase4K80    4K84    4K85    4K8N    4KBS    4KF6   
SCOP (Structural Classification of Proteins)4K80    4K84    4K85    4K8N    4KBS    4KF6   
CATH (Classification of proteins structures)4K80    4K84    4K85    4K8N    4KBS    4KF6   
SuperfamilyQ5TA50
Human Protein AtlasENSG00000224051
Peptide AtlasQ5TA50
IPIIPI00455408   
Protein Interaction databases
DIP (DOE-UCLA)Q5TA50
IntAct (EBI)Q5TA50
FunCoupENSG00000224051
BioGRIDCPTP
STRING (EMBL)CPTP
ZODIACCPTP
Ontologies - Pathways
QuickGOQ5TA50
Ontology : AmiGOphospholipid binding  phospholipid transporter activity  nuclear outer membrane  Golgi apparatus  cytosol  cytosol  plasma membrane  glycosphingolipid metabolic process  endosome membrane  glycolipid transport  glycolipid binding  ceramide 1-phosphate binding  ceramide 1-phosphate transporter activity  ceramide 1-phosphate transporter activity  ceramide 1-phosphate transport  
Ontology : EGO-EBIphospholipid binding  phospholipid transporter activity  nuclear outer membrane  Golgi apparatus  cytosol  cytosol  plasma membrane  glycosphingolipid metabolic process  endosome membrane  glycolipid transport  glycolipid binding  ceramide 1-phosphate binding  ceramide 1-phosphate transporter activity  ceramide 1-phosphate transporter activity  ceramide 1-phosphate transport  
NDEx NetworkCPTP
Atlas of Cancer Signalling NetworkCPTP
Wikipedia pathwaysCPTP
Orthology - Evolution
OrthoDB80772
GeneTree (enSembl)ENSG00000224051
Phylogenetic Trees/Animal Genes : TreeFamCPTP
HOVERGENQ5TA50
HOGENOMQ5TA50
Homologs : HomoloGeneCPTP
Homology/Alignments : Family Browser (UCSC)CPTP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPTP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPTP
dbVarCPTP
ClinVarCPTP
1000_GenomesCPTP 
Exome Variant ServerCPTP
ExAC (Exome Aggregation Consortium)CPTP (select the gene name)
Genetic variants : HAPMAP80772
Genomic Variants (DGV)CPTP [DGVbeta]
DECIPHERCPTP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPTP 
Mutations
ICGC Data PortalCPTP 
TCGA Data PortalCPTP 
Broad Tumor PortalCPTP
OASIS PortalCPTP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCPTP
BioMutasearch CPTP
DgiDB (Drug Gene Interaction Database)CPTP
DoCM (Curated mutations)CPTP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPTP (select a term)
intoGenCPTP
Cancer3DCPTP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615467   
Orphanet
MedgenCPTP
Genetic Testing Registry CPTP
NextProtQ5TA50 [Medical]
TSGene80772
GENETestsCPTP
Target ValidationCPTP
Huge Navigator CPTP [HugePedia]
snp3D : Map Gene to Disease80772
BioCentury BCIQCPTP
ClinGenCPTP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80772
Chemical/Pharm GKB GenePA162389853
Clinical trialCPTP
Miscellaneous
canSAR (ICR)CPTP (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPTP
EVEXCPTP
GoPubMedCPTP
iHOPCPTP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:28 CEST 2017

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