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CPXCR1 (CPX chromosome region, candidate 1)

Identity

Alias_symbol (synonym)CT77
Other alias
HGNC (Hugo) CPXCR1
LocusID (NCBI) 53336
Atlas_Id 62070
Location Xq21.31  [Link to chromosome band Xq21]
Location_base_pair Starts at 88747225 and ends at 88754784 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CPXCR1   2332
Cards
Entrez_Gene (NCBI)CPXCR1  53336  CPX chromosome region, candidate 1
AliasesCT77
GeneCards (Weizmann)CPXCR1
Ensembl hg19 (Hinxton)ENSG00000147183 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147183 [Gene_View]  chrX:88747225-88754784 [Contig_View]  CPXCR1 [Vega]
ICGC DataPortalENSG00000147183
TCGA cBioPortalCPXCR1
AceView (NCBI)CPXCR1
Genatlas (Paris)CPXCR1
WikiGenes53336
SOURCE (Princeton)CPXCR1
Genetics Home Reference (NIH)CPXCR1
Genomic and cartography
GoldenPath hg38 (UCSC)CPXCR1  -     chrX:88747225-88754784 +  Xq21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CPXCR1  -     Xq21.31   [Description]    (hg19-Feb_2009)
EnsemblCPXCR1 - Xq21.31 [CytoView hg19]  CPXCR1 - Xq21.31 [CytoView hg38]
Mapping of homologs : NCBICPXCR1 [Mapview hg19]  CPXCR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF284767 AK098646 AK313768 BC027614 BU570042
RefSeq transcript (Entrez)NM_001184771 NM_033048
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CPXCR1
Cluster EST : UnigeneHs.458292 [ NCBI ]
CGAP (NCI)Hs.458292
Alternative Splicing GalleryENSG00000147183
Gene ExpressionCPXCR1 [ NCBI-GEO ]   CPXCR1 [ EBI - ARRAY_EXPRESS ]   CPXCR1 [ SEEK ]   CPXCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)CPXCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)53336
GTEX Portal (Tissue expression)CPXCR1
Human Protein AtlasENSG00000147183-CPXCR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N123   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N123  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N123
Splice isoforms : SwissVarQ8N123
PhosPhoSitePlusQ8N123
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CPXCR1
DMDM Disease mutations53336
Blocks (Seattle)CPXCR1
SuperfamilyQ8N123
Human Protein Atlas [tissue]ENSG00000147183-CPXCR1 [tissue]
Peptide AtlasQ8N123
HPRD06474
IPIIPI00295611   
Protein Interaction databases
DIP (DOE-UCLA)Q8N123
IntAct (EBI)Q8N123
FunCoupENSG00000147183
BioGRIDCPXCR1
STRING (EMBL)CPXCR1
ZODIACCPXCR1
Ontologies - Pathways
QuickGOQ8N123
Ontology : AmiGOnucleic acid binding  
Ontology : EGO-EBInucleic acid binding  
NDEx NetworkCPXCR1
Atlas of Cancer Signalling NetworkCPXCR1
Wikipedia pathwaysCPXCR1
Orthology - Evolution
OrthoDB53336
GeneTree (enSembl)ENSG00000147183
Phylogenetic Trees/Animal Genes : TreeFamCPXCR1
HOVERGENQ8N123
HOGENOMQ8N123
Homologs : HomoloGeneCPXCR1
Homology/Alignments : Family Browser (UCSC)CPXCR1
Gene fusions - Rearrangements
Tumor Fusion PortalCPXCR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCPXCR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CPXCR1
dbVarCPXCR1
ClinVarCPXCR1
1000_GenomesCPXCR1 
Exome Variant ServerCPXCR1
ExAC (Exome Aggregation Consortium)ENSG00000147183
GNOMAD BrowserENSG00000147183
Genetic variants : HAPMAP53336
Genomic Variants (DGV)CPXCR1 [DGVbeta]
DECIPHERCPXCR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCPXCR1 
Mutations
ICGC Data PortalCPXCR1 
TCGA Data PortalCPXCR1 
Broad Tumor PortalCPXCR1
OASIS PortalCPXCR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCPXCR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCPXCR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CPXCR1
DgiDB (Drug Gene Interaction Database)CPXCR1
DoCM (Curated mutations)CPXCR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CPXCR1 (select a term)
intoGenCPXCR1
Cancer3DCPXCR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCPXCR1
MedgenCPXCR1
Genetic Testing Registry CPXCR1
NextProtQ8N123 [Medical]
TSGene53336
GENETestsCPXCR1
Target ValidationCPXCR1
Huge Navigator CPXCR1 [HugePedia]
snp3D : Map Gene to Disease53336
BioCentury BCIQCPXCR1
ClinGenCPXCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD53336
Chemical/Pharm GKB GenePA26852
Clinical trialCPXCR1
Miscellaneous
canSAR (ICR)CPXCR1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCPXCR1
EVEXCPXCR1
GoPubMedCPXCR1
iHOPCPXCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:24:59 CET 2017

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