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CR1L (complement component (3b/4b) receptor 1-like)

Identity

Alias_namescomplement component (3b/4b) receptor 1-like
Other alias-
HGNC (Hugo) CR1L
LocusID (NCBI) 1379
Atlas_Id 62074
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 207818458 and ends at 207897036 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MTOR (1p36.22) / CR1L (1q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CR1L   2335
Cards
Entrez_Gene (NCBI)CR1L  1379  complement component (3b/4b) receptor 1-like
Aliases
GeneCards (Weizmann)CR1L
Ensembl hg19 (Hinxton)ENSG00000197721 [Gene_View]  chr1:207818458-207897036 [Contig_View]  CR1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000197721 [Gene_View]  chr1:207818458-207897036 [Contig_View]  CR1L [Vega]
ICGC DataPortalENSG00000197721
TCGA cBioPortalCR1L
AceView (NCBI)CR1L
Genatlas (Paris)CR1L
WikiGenes1379
SOURCE (Princeton)CR1L
Genetics Home Reference (NIH)CR1L
Genomic and cartography
GoldenPath hg19 (UCSC)CR1L  -     chr1:207818458-207897036 +  1q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CR1L  -     1q32.2   [Description]    (hg38-Dec_2013)
EnsemblCR1L - 1q32.2 [CytoView hg19]  CR1L - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBICR1L [Mapview hg19]  CR1L [Mapview hg38]
OMIM605886   
Gene and transcription
Genbank (Entrez)AY114160 BC109190 BC109191 BC160171 BE842163
RefSeq transcript (Entrez)NM_175710
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)CR1L
Cluster EST : UnigeneHs.655194 [ NCBI ]
CGAP (NCI)Hs.655194
Alternative Splicing GalleryENSG00000197721
Gene ExpressionCR1L [ NCBI-GEO ]   CR1L [ EBI - ARRAY_EXPRESS ]   CR1L [ SEEK ]   CR1L [ MEM ]
Gene Expression Viewer (FireBrowse)CR1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1379
GTEX Portal (Tissue expression)CR1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2VPA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2VPA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2VPA4
Splice isoforms : SwissVarQ2VPA4
PhosPhoSitePlusQ2VPA4
Domaine pattern : Prosite (Expaxy)SUSHI (PS50923)   
Domains : Interpro (EBI)Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)CR1L
DMDM Disease mutations1379
Blocks (Seattle)CR1L
SuperfamilyQ2VPA4
Human Protein AtlasENSG00000197721
Peptide AtlasQ2VPA4
IPIIPI00472110   IPI00885197   IPI00965735   
Protein Interaction databases
DIP (DOE-UCLA)Q2VPA4
IntAct (EBI)Q2VPA4
FunCoupENSG00000197721
BioGRIDCR1L
STRING (EMBL)CR1L
ZODIACCR1L
Ontologies - Pathways
QuickGOQ2VPA4
Ontology : AmiGOextracellular region  cytoplasm  membrane  receptor complex  
Ontology : EGO-EBIextracellular region  cytoplasm  membrane  receptor complex  
NDEx NetworkCR1L
Atlas of Cancer Signalling NetworkCR1L
Wikipedia pathwaysCR1L
Orthology - Evolution
OrthoDB1379
GeneTree (enSembl)ENSG00000197721
Phylogenetic Trees/Animal Genes : TreeFamCR1L
HOVERGENQ2VPA4
HOGENOMQ2VPA4
Homologs : HomoloGeneCR1L
Homology/Alignments : Family Browser (UCSC)CR1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCR1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CR1L
dbVarCR1L
ClinVarCR1L
1000_GenomesCR1L 
Exome Variant ServerCR1L
ExAC (Exome Aggregation Consortium)CR1L (select the gene name)
Genetic variants : HAPMAP1379
Genomic Variants (DGV)CR1L [DGVbeta]
DECIPHER (Syndromes)1:207818458-207897036  ENSG00000197721
CONAN: Copy Number AnalysisCR1L 
Mutations
ICGC Data PortalCR1L 
TCGA Data PortalCR1L 
Broad Tumor PortalCR1L
OASIS PortalCR1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCR1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCR1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CR1L
DgiDB (Drug Gene Interaction Database)CR1L
DoCM (Curated mutations)CR1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CR1L (select a term)
intoGenCR1L
Cancer3DCR1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605886   
Orphanet
MedgenCR1L
Genetic Testing Registry CR1L
NextProtQ2VPA4 [Medical]
TSGene1379
GENETestsCR1L
Huge Navigator CR1L [HugePedia]
snp3D : Map Gene to Disease1379
BioCentury BCIQCR1L
ClinGenCR1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1379
Chemical/Pharm GKB GenePA26856
Clinical trialCR1L
Miscellaneous
canSAR (ICR)CR1L (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCR1L
EVEXCR1L
GoPubMedCR1L
iHOPCR1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:16 CET 2017

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