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CRABP1 (cellular retinoic acid binding protein 1)

Identity

Alias_namesRBP5
cellular retinoic acid-binding protein 1
Alias_symbol (synonym)CRABP
CRABP-I
CRABPI
Other alias
HGNC (Hugo) CRABP1
LocusID (NCBI) 1381
Atlas_Id 40142
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 78632666 and ends at 78640572 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PDE4D (5q11.2) / CRABP1 (15q25.1)PDE4D 5q11.2 / CRABP1 15q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRABP1   2338
Cards
Entrez_Gene (NCBI)CRABP1  1381  cellular retinoic acid binding protein 1
AliasesCRABP; CRABP-I; CRABPI; RBP5
GeneCards (Weizmann)CRABP1
Ensembl hg19 (Hinxton)ENSG00000166426 [Gene_View]  chr15:78632666-78640572 [Contig_View]  CRABP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166426 [Gene_View]  chr15:78632666-78640572 [Contig_View]  CRABP1 [Vega]
ICGC DataPortalENSG00000166426
TCGA cBioPortalCRABP1
AceView (NCBI)CRABP1
Genatlas (Paris)CRABP1
WikiGenes1381
SOURCE (Princeton)CRABP1
Genetics Home Reference (NIH)CRABP1
Genomic and cartography
GoldenPath hg19 (UCSC)CRABP1  -     chr15:78632666-78640572 +  15q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRABP1  -     15q25.1   [Description]    (hg38-Dec_2013)
EnsemblCRABP1 - 15q25.1 [CytoView hg19]  CRABP1 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBICRABP1 [Mapview hg19]  CRABP1 [Mapview hg38]
OMIM180230   
Gene and transcription
Genbank (Entrez)AB593091 AI863257 AL110113 AU132726 BC022069
RefSeq transcript (Entrez)NM_004378
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)CRABP1
Cluster EST : UnigeneHs.346950 [ NCBI ]
CGAP (NCI)Hs.346950
Alternative Splicing GalleryENSG00000166426
Gene ExpressionCRABP1 [ NCBI-GEO ]   CRABP1 [ EBI - ARRAY_EXPRESS ]   CRABP1 [ SEEK ]   CRABP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRABP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1381
GTEX Portal (Tissue expression)CRABP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29762   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29762  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29762
Splice isoforms : SwissVarP29762
PhosPhoSitePlusP29762
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    CRABP1    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)CRABP1
DMDM Disease mutations1381
Blocks (Seattle)CRABP1
SuperfamilyP29762
Human Protein AtlasENSG00000166426
Peptide AtlasP29762
HPRD07520
IPIIPI00219930   IPI00796739   
Protein Interaction databases
DIP (DOE-UCLA)P29762
IntAct (EBI)P29762
FunCoupENSG00000166426
BioGRIDCRABP1
STRING (EMBL)CRABP1
ZODIACCRABP1
Ontologies - Pathways
QuickGOP29762
Ontology : AmiGOretinoic acid binding  transporter activity  retinoid binding  protein binding  cytosol  transport  signal transduction  multicellular organism development  retinal binding  retinol binding  retinoic acid catabolic process  
Ontology : EGO-EBIretinoic acid binding  transporter activity  retinoid binding  protein binding  cytosol  transport  signal transduction  multicellular organism development  retinal binding  retinol binding  retinoic acid catabolic process  
NDEx NetworkCRABP1
Atlas of Cancer Signalling NetworkCRABP1
Wikipedia pathwaysCRABP1
Orthology - Evolution
OrthoDB1381
GeneTree (enSembl)ENSG00000166426
Phylogenetic Trees/Animal Genes : TreeFamCRABP1
HOVERGENP29762
HOGENOMP29762
Homologs : HomoloGeneCRABP1
Homology/Alignments : Family Browser (UCSC)CRABP1
Gene fusions - Rearrangements
Fusion : MitelmanPDE4D/CRABP1 [5q11.2/15q25.1]  [t(5;15)(q12;q25)]  
Fusion: TCGAPDE4D 5q11.2 CRABP1 15q25.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRABP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRABP1
dbVarCRABP1
ClinVarCRABP1
1000_GenomesCRABP1 
Exome Variant ServerCRABP1
ExAC (Exome Aggregation Consortium)CRABP1 (select the gene name)
Genetic variants : HAPMAP1381
Genomic Variants (DGV)CRABP1 [DGVbeta]
DECIPHER (Syndromes)15:78632666-78640572  ENSG00000166426
CONAN: Copy Number AnalysisCRABP1 
Mutations
ICGC Data PortalCRABP1 
TCGA Data PortalCRABP1 
Broad Tumor PortalCRABP1
OASIS PortalCRABP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRABP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRABP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRABP1
DgiDB (Drug Gene Interaction Database)CRABP1
DoCM (Curated mutations)CRABP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRABP1 (select a term)
intoGenCRABP1
Cancer3DCRABP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180230   
Orphanet
MedgenCRABP1
Genetic Testing Registry CRABP1
NextProtP29762 [Medical]
TSGene1381
GENETestsCRABP1
Huge Navigator CRABP1 [HugePedia]
snp3D : Map Gene to Disease1381
BioCentury BCIQCRABP1
ClinGenCRABP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1381
Chemical/Pharm GKB GenePA26858
Clinical trialCRABP1
Miscellaneous
canSAR (ICR)CRABP1 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRABP1
EVEXCRABP1
GoPubMedCRABP1
iHOPCRABP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:01:37 CET 2017

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