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CRABP1 (cellular retinoic acid binding protein 1)

Identity

Alias (NCBI)CRABP
CRABP-I
CRABPI
RBP5
HGNC (Hugo) CRABP1
HGNC Alias symbCRABP
CRABP-I
CRABPI
HGNC Previous nameRBP5
HGNC Previous namecellular retinoic acid-binding protein 1
LocusID (NCBI) 1381
Atlas_Id 40142
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 78340353 and ends at 78348225 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PDE4D (5q11.2) / CRABP1 (15q25.1)PDE4D 5q11.2 / CRABP1 15q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CRABP1   2338
Cards
Entrez_Gene (NCBI)CRABP1    cellular retinoic acid binding protein 1
AliasesCRABP; CRABP-I; CRABPI; RBP5
GeneCards (Weizmann)CRABP1
Ensembl hg19 (Hinxton)ENSG00000166426 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166426 [Gene_View]  ENSG00000166426 [Sequence]  chr15:78340353-78348225 [Contig_View]  CRABP1 [Vega]
ICGC DataPortalENSG00000166426
TCGA cBioPortalCRABP1
AceView (NCBI)CRABP1
Genatlas (Paris)CRABP1
SOURCE (Princeton)CRABP1
Genetics Home Reference (NIH)CRABP1
Genomic and cartography
GoldenPath hg38 (UCSC)CRABP1  -     chr15:78340353-78348225 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRABP1  -     15q25.1   [Description]    (hg19-Feb_2009)
GoldenPathCRABP1 - 15q25.1 [CytoView hg19]  CRABP1 - 15q25.1 [CytoView hg38]
ImmunoBaseENSG00000166426
Genome Data Viewer NCBICRABP1 [Mapview hg19]  
OMIM180230   
Gene and transcription
Genbank (Entrez)AB593091 AI863257 AL110113 AU132726 BC022069
RefSeq transcript (Entrez)NM_004378
Consensus coding sequences : CCDS (NCBI)CRABP1
Gene ExpressionCRABP1 [ NCBI-GEO ]   CRABP1 [ EBI - ARRAY_EXPRESS ]   CRABP1 [ SEEK ]   CRABP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRABP1 [ Firebrowse - Broad ]
GenevisibleExpression of CRABP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1381
GTEX Portal (Tissue expression)CRABP1
Human Protein AtlasENSG00000166426-CRABP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29762   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29762  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29762
PhosPhoSitePlusP29762
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    CRABP1    Fatty_acid-bd    ILBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)CRABP1
SuperfamilyP29762
AlphaFold pdb e-kbP29762   
Human Protein Atlas [tissue]ENSG00000166426-CRABP1 [tissue]
HPRD07520
Protein Interaction databases
DIP (DOE-UCLA)P29762
IntAct (EBI)P29762
BioGRIDCRABP1
STRING (EMBL)CRABP1
ZODIACCRABP1
Ontologies - Pathways
QuickGOP29762
Ontology : AmiGOretinoic acid binding  retinoid binding  protein binding  cytosol  signal transduction  multicellular organism development  retinal binding  retinol binding  retinoic acid catabolic process  
Ontology : EGO-EBIretinoic acid binding  retinoid binding  protein binding  cytosol  signal transduction  multicellular organism development  retinal binding  retinol binding  retinoic acid catabolic process  
NDEx NetworkCRABP1
Atlas of Cancer Signalling NetworkCRABP1
Wikipedia pathwaysCRABP1
Orthology - Evolution
OrthoDB1381
GeneTree (enSembl)ENSG00000166426
Phylogenetic Trees/Animal Genes : TreeFamCRABP1
Homologs : HomoloGeneCRABP1
Homology/Alignments : Family Browser (UCSC)CRABP1
Gene fusions - Rearrangements
Fusion : MitelmanPDE4D/CRABP1 [5q11.2/15q25.1]  
Fusion : QuiverCRABP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRABP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRABP1
dbVarCRABP1
ClinVarCRABP1
MonarchCRABP1
1000_GenomesCRABP1 
Exome Variant ServerCRABP1
GNOMAD BrowserENSG00000166426
Varsome BrowserCRABP1
ACMGCRABP1 variants
VarityP29762
Genomic Variants (DGV)CRABP1 [DGVbeta]
DECIPHERCRABP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRABP1 
Mutations
ICGC Data PortalCRABP1 
TCGA Data PortalCRABP1 
Broad Tumor PortalCRABP1
OASIS PortalCRABP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRABP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCRABP1
Mutations and Diseases : HGMDCRABP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCRABP1
DgiDB (Drug Gene Interaction Database)CRABP1
DoCM (Curated mutations)CRABP1
CIViC (Clinical Interpretations of Variants in Cancer)CRABP1
Cancer3DCRABP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180230   
Orphanet
DisGeNETCRABP1
MedgenCRABP1
Genetic Testing Registry CRABP1
NextProtP29762 [Medical]
GENETestsCRABP1
Target ValidationCRABP1
Huge Navigator CRABP1 [HugePedia]
ClinGenCRABP1
Clinical trials, drugs, therapy
MyCancerGenomeCRABP1
Protein Interactions : CTDCRABP1
Pharm GKB GenePA26858
PharosP29762
Clinical trialCRABP1
Miscellaneous
canSAR (ICR)CRABP1
HarmonizomeCRABP1
DataMed IndexCRABP1
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCRABP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:05:06 CEST 2021

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