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CRACR2A (calcium release activated channel regulator 2A)

Identity

Alias_namesEFCAB4B
EF-hand calcium binding domain 4B
Alias_symbol (synonym)MGC4266
Other alias
HGNC (Hugo) CRACR2A
LocusID (NCBI) 84766
Atlas_Id 62075
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 3724494 and ends at 3862366 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CRACR2A (12p13.32) / C12orf4 (12p13.32)MPHOSPH9 (12q24.31) / CRACR2A (12p13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRACR2A   28657
Cards
Entrez_Gene (NCBI)CRACR2A  84766  calcium release activated channel regulator 2A
AliasesEFCAB4B
GeneCards (Weizmann)CRACR2A
Ensembl hg19 (Hinxton)ENSG00000130038 [Gene_View]  chr12:3724494-3862366 [Contig_View]  CRACR2A [Vega]
Ensembl hg38 (Hinxton)ENSG00000130038 [Gene_View]  chr12:3724494-3862366 [Contig_View]  CRACR2A [Vega]
ICGC DataPortalENSG00000130038
TCGA cBioPortalCRACR2A
AceView (NCBI)CRACR2A
Genatlas (Paris)CRACR2A
WikiGenes84766
SOURCE (Princeton)CRACR2A
Genetics Home Reference (NIH)CRACR2A
Genomic and cartography
GoldenPath hg19 (UCSC)CRACR2A  -     chr12:3724494-3862366 -  12p13.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRACR2A  -     12p13.32   [Description]    (hg38-Dec_2013)
EnsemblCRACR2A - 12p13.32 [CytoView hg19]  CRACR2A - 12p13.32 [CytoView hg38]
Mapping of homologs : NCBICRACR2A [Mapview hg19]  CRACR2A [Mapview hg38]
OMIM614178   
Gene and transcription
Genbank (Entrez)AK057608 AK091124 AK304017 BC004524 BC150643
RefSeq transcript (Entrez)NM_001144958 NM_001144959 NM_032680
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009759 NW_004929382
Consensus coding sequences : CCDS (NCBI)CRACR2A
Cluster EST : UnigeneHs.504534 [ NCBI ]
CGAP (NCI)Hs.504534
Alternative Splicing GalleryENSG00000130038
Gene ExpressionCRACR2A [ NCBI-GEO ]   CRACR2A [ EBI - ARRAY_EXPRESS ]   CRACR2A [ SEEK ]   CRACR2A [ MEM ]
Gene Expression Viewer (FireBrowse)CRACR2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84766
GTEX Portal (Tissue expression)CRACR2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSW2
Splice isoforms : SwissVarQ9BSW2
PhosPhoSitePlusQ9BSW2
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)CRACR2A
DMDM Disease mutations84766
Blocks (Seattle)CRACR2A
SuperfamilyQ9BSW2
Human Protein AtlasENSG00000130038
Peptide AtlasQ9BSW2
HPRD10079
IPIIPI00013398   IPI00884187   IPI00921550   IPI00940161   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSW2
IntAct (EBI)Q9BSW2
FunCoupENSG00000130038
BioGRIDCRACR2A
STRING (EMBL)CRACR2A
ZODIACCRACR2A
Ontologies - Pathways
QuickGOQ9BSW2
Ontology : AmiGOstore-operated calcium entry  immune system process  calcium ion binding  protein binding  nucleus  nucleolus  cytoplasm  Golgi apparatus  membrane  activation of store-operated calcium channel activity  positive regulation of calcium ion transport  
Ontology : EGO-EBIstore-operated calcium entry  immune system process  calcium ion binding  protein binding  nucleus  nucleolus  cytoplasm  Golgi apparatus  membrane  activation of store-operated calcium channel activity  positive regulation of calcium ion transport  
NDEx NetworkCRACR2A
Atlas of Cancer Signalling NetworkCRACR2A
Wikipedia pathwaysCRACR2A
Orthology - Evolution
OrthoDB84766
GeneTree (enSembl)ENSG00000130038
Phylogenetic Trees/Animal Genes : TreeFamCRACR2A
HOVERGENQ9BSW2
HOGENOMQ9BSW2
Homologs : HomoloGeneCRACR2A
Homology/Alignments : Family Browser (UCSC)CRACR2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRACR2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRACR2A
dbVarCRACR2A
ClinVarCRACR2A
1000_GenomesCRACR2A 
Exome Variant ServerCRACR2A
ExAC (Exome Aggregation Consortium)CRACR2A (select the gene name)
Genetic variants : HAPMAP84766
Genomic Variants (DGV)CRACR2A [DGVbeta]
DECIPHER (Syndromes)12:3724494-3862366  ENSG00000130038
CONAN: Copy Number AnalysisCRACR2A 
Mutations
ICGC Data PortalCRACR2A 
TCGA Data PortalCRACR2A 
Broad Tumor PortalCRACR2A
OASIS PortalCRACR2A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCRACR2A
BioMutasearch CRACR2A
DgiDB (Drug Gene Interaction Database)CRACR2A
DoCM (Curated mutations)CRACR2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRACR2A (select a term)
intoGenCRACR2A
Cancer3DCRACR2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614178   
Orphanet
MedgenCRACR2A
Genetic Testing Registry CRACR2A
NextProtQ9BSW2 [Medical]
TSGene84766
GENETestsCRACR2A
Huge Navigator CRACR2A [HugePedia]
snp3D : Map Gene to Disease84766
BioCentury BCIQCRACR2A
ClinGenCRACR2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84766
Chemical/Pharm GKB GenePA144596438
Clinical trialCRACR2A
Miscellaneous
canSAR (ICR)CRACR2A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRACR2A
EVEXCRACR2A
GoPubMedCRACR2A
iHOPCRACR2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:17 CET 2017

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