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CRAMP1 (cramped chromatin regulator homolog 1)

Identity

Alias_namesCRAMP1L
Crm (Cramped Drosophila)-like
Crm, cramped-like (Drosophila)
Alias_symbol (synonym)KIAA1426
Other aliasHN1L
TCE4
HGNC (Hugo) CRAMP1
LocusID (NCBI) 57585
Atlas_Id 77743
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1614640 and ends at 1677908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDK5R2 (2q35) / CRAMP1 (16p13.3)CRAMP1 (16p13.3) / CRAMP1 (16p13.3)MYO9A (15q23) / CRAMP1 (16p13.3)
PRSS48 (4q31.3) / CRAMP1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias TL_t1616p13p13ID2621

External links

Nomenclature
HGNC (Hugo)CRAMP1   14122
Cards
Entrez_Gene (NCBI)CRAMP1  57585  cramped chromatin regulator homolog 1
AliasesCRAMP1L; HN1L; TCE4
GeneCards (Weizmann)CRAMP1
Ensembl hg19 (Hinxton)ENSG00000007545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007545 [Gene_View]  ENSG00000007545 [Sequence]  chr16:1614640-1677908 [Contig_View]  CRAMP1 [Vega]
ICGC DataPortalENSG00000007545
TCGA cBioPortalCRAMP1
AceView (NCBI)CRAMP1
Genatlas (Paris)CRAMP1
WikiGenes57585
SOURCE (Princeton)CRAMP1
Genetics Home Reference (NIH)CRAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)CRAMP1  -     chr16:1614640-1677908 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRAMP1  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathCRAMP1 - 16p13.3 [CytoView hg19]  CRAMP1 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000007545
Mapping of homologs : NCBICRAMP1 [Mapview hg19]  CRAMP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037847 AK056087 AK095591 BC137172 BC137173
RefSeq transcript (Entrez)NM_020825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRAMP1
Cluster EST : UnigeneHs.603676 [ NCBI ]
CGAP (NCI)Hs.603676
Alternative Splicing GalleryENSG00000007545
Gene ExpressionCRAMP1 [ NCBI-GEO ]   CRAMP1 [ EBI - ARRAY_EXPRESS ]   CRAMP1 [ SEEK ]   CRAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRAMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57585
GTEX Portal (Tissue expression)CRAMP1
Human Protein AtlasENSG00000007545-CRAMP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RY5
Splice isoforms : SwissVarQ96RY5
PhosPhoSitePlusQ96RY5
Domaine pattern : Prosite (Expaxy)SANT (PS51293)   
Domains : Interpro (EBI)SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)CRAMP1
DMDM Disease mutations57585
Blocks (Seattle)CRAMP1
SuperfamilyQ96RY5
Human Protein Atlas [tissue]ENSG00000007545-CRAMP1 [tissue]
Peptide AtlasQ96RY5
HPRD13092
IPIIPI00924538   IPI00477543   IPI00970962   IPI00924950   IPI00925585   
Protein Interaction databases
DIP (DOE-UCLA)Q96RY5
IntAct (EBI)Q96RY5
FunCoupENSG00000007545
BioGRIDCRAMP1
STRING (EMBL)CRAMP1
ZODIACCRAMP1
Ontologies - Pathways
QuickGOQ96RY5
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  chromatin binding  nucleus  regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  chromatin binding  nucleus  regulation of transcription by RNA polymerase II  
NDEx NetworkCRAMP1
Atlas of Cancer Signalling NetworkCRAMP1
Wikipedia pathwaysCRAMP1
Orthology - Evolution
OrthoDB57585
GeneTree (enSembl)ENSG00000007545
Phylogenetic Trees/Animal Genes : TreeFamCRAMP1
HOGENOMQ96RY5
Homologs : HomoloGeneCRAMP1
Homology/Alignments : Family Browser (UCSC)CRAMP1
Gene fusions - Rearrangements
Fusion : QuiverCRAMP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRAMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRAMP1
dbVarCRAMP1
ClinVarCRAMP1
1000_GenomesCRAMP1 
Exome Variant ServerCRAMP1
ExAC (Exome Aggregation Consortium)ENSG00000007545
GNOMAD BrowserENSG00000007545
Varsome BrowserCRAMP1
Genetic variants : HAPMAP57585
Genomic Variants (DGV)CRAMP1 [DGVbeta]
DECIPHERCRAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRAMP1 
Mutations
ICGC Data PortalCRAMP1 
TCGA Data PortalCRAMP1 
Broad Tumor PortalCRAMP1
OASIS PortalCRAMP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCRAMP1
BioMutasearch CRAMP1
DgiDB (Drug Gene Interaction Database)CRAMP1
DoCM (Curated mutations)CRAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRAMP1 (select a term)
intoGenCRAMP1
Cancer3DCRAMP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCRAMP1
MedgenCRAMP1
Genetic Testing Registry CRAMP1
NextProtQ96RY5 [Medical]
TSGene57585
GENETestsCRAMP1
Target ValidationCRAMP1
Huge Navigator CRAMP1 [HugePedia]
snp3D : Map Gene to Disease57585
BioCentury BCIQCRAMP1
ClinGenCRAMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57585
Chemical/Pharm GKB GenePA26861
Clinical trialCRAMP1
Miscellaneous
canSAR (ICR)CRAMP1 (select the gene name)
DataMed IndexCRAMP1
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRAMP1
EVEXCRAMP1
GoPubMedCRAMP1
iHOPCRAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:24:34 CEST 2019
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