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CRAMP1 (cramped chromatin regulator homolog 1)

Identity

Alias (NCBI)CRAMP1L
HN1L
TCE4
HGNC (Hugo) CRAMP1
HGNC Alias symbKIAA1426
HGNC Previous nameCRAMP1L
HGNC Previous nameCrm (Cramped Drosophila)-like
 Crm, cramped-like (Drosophila)
LocusID (NCBI) 57585
Atlas_Id 77743
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1614640 and ends at 1677908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDK5R2 (2q35) / CRAMP1 (16p13.3)CRAMP1 (16p13.3) / CRAMP1 (16p13.3)MYO9A (15q23) / CRAMP1 (16p13.3)
PRSS48 (4q31.3) / CRAMP1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(16;16)(p13;p13) CRAMP1/CLCN7
t(16;16)(p13;p13) CRAMP1/CLCN7


External links

Nomenclature
HGNC (Hugo)CRAMP1   14122
Cards
Entrez_Gene (NCBI)CRAMP1    cramped chromatin regulator homolog 1
AliasesCRAMP1L; HN1L; TCE4
GeneCards (Weizmann)CRAMP1
Ensembl hg19 (Hinxton)ENSG00000007545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007545 [Gene_View]  ENSG00000007545 [Sequence]  chr16:1614640-1677908 [Contig_View]  CRAMP1 [Vega]
ICGC DataPortalENSG00000007545
TCGA cBioPortalCRAMP1
AceView (NCBI)CRAMP1
Genatlas (Paris)CRAMP1
SOURCE (Princeton)CRAMP1
Genetics Home Reference (NIH)CRAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)CRAMP1  -     chr16:1614640-1677908 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRAMP1  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathCRAMP1 - 16p13.3 [CytoView hg19]  CRAMP1 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000007545
genome Data Viewer NCBICRAMP1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB037847 AK056087 AK095591 BC137172 BC137173
RefSeq transcript (Entrez)NM_020825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRAMP1
Alternative Splicing GalleryENSG00000007545
Gene ExpressionCRAMP1 [ NCBI-GEO ]   CRAMP1 [ EBI - ARRAY_EXPRESS ]   CRAMP1 [ SEEK ]   CRAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRAMP1 [ Firebrowse - Broad ]
GenevisibleExpression of CRAMP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57585
GTEX Portal (Tissue expression)CRAMP1
Human Protein AtlasENSG00000007545-CRAMP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RY5
Splice isoforms : SwissVarQ96RY5
PhosPhoSitePlusQ96RY5
Domaine pattern : Prosite (Expaxy)SANT (PS51293)   
Domains : Interpro (EBI)SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)CRAMP1
Blocks (Seattle)CRAMP1
SuperfamilyQ96RY5
Human Protein Atlas [tissue]ENSG00000007545-CRAMP1 [tissue]
Peptide AtlasQ96RY5
HPRD13092
IPIIPI00924538   IPI00477543   IPI00970962   IPI00924950   IPI00925585   
Protein Interaction databases
DIP (DOE-UCLA)Q96RY5
IntAct (EBI)Q96RY5
BioGRIDCRAMP1
STRING (EMBL)CRAMP1
ZODIACCRAMP1
Ontologies - Pathways
QuickGOQ96RY5
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  chromatin binding  nucleus  regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  chromatin binding  nucleus  regulation of transcription by RNA polymerase II  
NDEx NetworkCRAMP1
Atlas of Cancer Signalling NetworkCRAMP1
Wikipedia pathwaysCRAMP1
Orthology - Evolution
OrthoDB57585
GeneTree (enSembl)ENSG00000007545
Phylogenetic Trees/Animal Genes : TreeFamCRAMP1
HOGENOMQ96RY5
Homologs : HomoloGeneCRAMP1
Homology/Alignments : Family Browser (UCSC)CRAMP1
Gene fusions - Rearrangements
Fusion : QuiverCRAMP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRAMP1 [hg38]
dbVarCRAMP1
ClinVarCRAMP1
MonarchCRAMP1
1000_GenomesCRAMP1 
Exome Variant ServerCRAMP1
GNOMAD BrowserENSG00000007545
Varsome BrowserCRAMP1
Genomic Variants (DGV)CRAMP1 [DGVbeta]
DECIPHERCRAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRAMP1 
Mutations
ICGC Data PortalCRAMP1 
TCGA Data PortalCRAMP1 
Broad Tumor PortalCRAMP1
OASIS PortalCRAMP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRAMP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCRAMP1
Mutations and Diseases : HGMDCRAMP1
BioMutasearch CRAMP1
DgiDB (Drug Gene Interaction Database)CRAMP1
DoCM (Curated mutations)CRAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRAMP1 (select a term)
intoGenCRAMP1
Cancer3DCRAMP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCRAMP1
MedgenCRAMP1
Genetic Testing Registry CRAMP1
NextProtQ96RY5 [Medical]
GENETestsCRAMP1
Target ValidationCRAMP1
Huge Navigator CRAMP1 [HugePedia]
ClinGenCRAMP1
Clinical trials, drugs, therapy
MyCancerGenomeCRAMP1
Protein Interactions : CTD
Pharm GKB GenePA26861
Clinical trialCRAMP1
Miscellaneous
canSAR (ICR)CRAMP1 (select the gene name)
HarmonizomeCRAMP1
DataMed IndexCRAMP1
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRAMP1
EVEXCRAMP1
GoPubMedCRAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 16:50:40 CET 2020

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