Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CRAMP1 (cramped chromatin regulator homolog 1)

Identity

Alias_namesCRAMP1L
Crm (Cramped Drosophila)-like
Crm, cramped-like (Drosophila)
Alias_symbol (synonym)KIAA1426
Other aliasHN1L
TCE4
HGNC (Hugo) CRAMP1
LocusID (NCBI) 57585
Atlas_Id 77743
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1614640 and ends at 1677908 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDK5R2 (2q35) / CRAMP1 (16p13.3)CRAMP1 (16p13.3) / CRAMP1 (16p13.3)MYO9A (15q23) / CRAMP1 (16p13.3)
PRSS48 (4q31.3) / CRAMP1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRAMP1   14122
Cards
Entrez_Gene (NCBI)CRAMP1  57585  cramped chromatin regulator homolog 1
AliasesCRAMP1L; HN1L; TCE4
GeneCards (Weizmann)CRAMP1
Ensembl hg19 (Hinxton)ENSG00000007545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007545 [Gene_View]  chr16:1614640-1677908 [Contig_View]  CRAMP1 [Vega]
ICGC DataPortalENSG00000007545
TCGA cBioPortalCRAMP1
AceView (NCBI)CRAMP1
Genatlas (Paris)CRAMP1
WikiGenes57585
SOURCE (Princeton)CRAMP1
Genetics Home Reference (NIH)CRAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)CRAMP1  -     chr16:1614640-1677908 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRAMP1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblCRAMP1 - 16p13.3 [CytoView hg19]  CRAMP1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICRAMP1 [Mapview hg19]  CRAMP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037847 AK056087 AK095591 BC137172 BC137173
RefSeq transcript (Entrez)NM_020825
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRAMP1
Cluster EST : UnigeneHs.603676 [ NCBI ]
CGAP (NCI)Hs.603676
Alternative Splicing GalleryENSG00000007545
Gene ExpressionCRAMP1 [ NCBI-GEO ]   CRAMP1 [ EBI - ARRAY_EXPRESS ]   CRAMP1 [ SEEK ]   CRAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRAMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57585
GTEX Portal (Tissue expression)CRAMP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RY5
Splice isoforms : SwissVarQ96RY5
PhosPhoSitePlusQ96RY5
Domaine pattern : Prosite (Expaxy)SANT (PS51293)   
Domains : Interpro (EBI)SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)CRAMP1
DMDM Disease mutations57585
Blocks (Seattle)CRAMP1
SuperfamilyQ96RY5
Human Protein AtlasENSG00000007545
Peptide AtlasQ96RY5
HPRD13092
IPIIPI00924538   IPI00477543   IPI00970962   IPI00924950   IPI00925585   
Protein Interaction databases
DIP (DOE-UCLA)Q96RY5
IntAct (EBI)Q96RY5
FunCoupENSG00000007545
BioGRIDCRAMP1
STRING (EMBL)CRAMP1
ZODIACCRAMP1
Ontologies - Pathways
QuickGOQ96RY5
Ontology : AmiGODNA binding  chromatin binding  nucleus  
Ontology : EGO-EBIDNA binding  chromatin binding  nucleus  
NDEx NetworkCRAMP1
Atlas of Cancer Signalling NetworkCRAMP1
Wikipedia pathwaysCRAMP1
Orthology - Evolution
OrthoDB57585
GeneTree (enSembl)ENSG00000007545
Phylogenetic Trees/Animal Genes : TreeFamCRAMP1
HOVERGENQ96RY5
HOGENOMQ96RY5
Homologs : HomoloGeneCRAMP1
Homology/Alignments : Family Browser (UCSC)CRAMP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRAMP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRAMP1
dbVarCRAMP1
ClinVarCRAMP1
1000_GenomesCRAMP1 
Exome Variant ServerCRAMP1
ExAC (Exome Aggregation Consortium)CRAMP1 (select the gene name)
Genetic variants : HAPMAP57585
Genomic Variants (DGV)CRAMP1 [DGVbeta]
DECIPHERCRAMP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRAMP1 
Mutations
ICGC Data PortalCRAMP1 
TCGA Data PortalCRAMP1 
Broad Tumor PortalCRAMP1
OASIS PortalCRAMP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCRAMP1
BioMutasearch CRAMP1
DgiDB (Drug Gene Interaction Database)CRAMP1
DoCM (Curated mutations)CRAMP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRAMP1 (select a term)
intoGenCRAMP1
Cancer3DCRAMP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCRAMP1
Genetic Testing Registry CRAMP1
NextProtQ96RY5 [Medical]
TSGene57585
GENETestsCRAMP1
Target ValidationCRAMP1
Huge Navigator CRAMP1 [HugePedia]
snp3D : Map Gene to Disease57585
BioCentury BCIQCRAMP1
ClinGenCRAMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57585
Chemical/Pharm GKB GenePA26861
Clinical trialCRAMP1
Miscellaneous
canSAR (ICR)CRAMP1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRAMP1
EVEXCRAMP1
GoPubMedCRAMP1
iHOPCRAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:44:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.