Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CRAMP1L (Crm, cramped-like (Drosophila))

Identity

Other aliasHN1L
TCE4
HGNC (Hugo) CRAMP1L
LocusID (NCBI) 57585
Atlas_Id 62076
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1664641 and ends at 1727909 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRAMP1L   14122
Cards
Entrez_Gene (NCBI)CRAMP1L  57585  Crm, cramped-like (Drosophila)
AliasesHN1L; TCE4
GeneCards (Weizmann)CRAMP1L
Ensembl hg19 (Hinxton)ENSG00000007545 [Gene_View]  chr16:1664641-1727909 [Contig_View]  CRAMP1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000007545 [Gene_View]  chr16:1664641-1727909 [Contig_View]  CRAMP1L [Vega]
ICGC DataPortalENSG00000007545
TCGA cBioPortalCRAMP1L
AceView (NCBI)CRAMP1L
Genatlas (Paris)CRAMP1L
WikiGenes57585
SOURCE (Princeton)CRAMP1L
Genetics Home Reference (NIH)CRAMP1L
Genomic and cartography
GoldenPath hg19 (UCSC)CRAMP1L  -     chr16:1664641-1727909 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRAMP1L  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblCRAMP1L - 16p13.3 [CytoView hg19]  CRAMP1L - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBICRAMP1L [Mapview hg19]  CRAMP1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037847 AK056087 AK095591 BC137172 BC137173
RefSeq transcript (Entrez)NM_020825
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)CRAMP1L
Cluster EST : UnigeneHs.603676 [ NCBI ]
CGAP (NCI)Hs.603676
Alternative Splicing GalleryENSG00000007545
Gene ExpressionCRAMP1L [ NCBI-GEO ]   CRAMP1L [ EBI - ARRAY_EXPRESS ]   CRAMP1L [ SEEK ]   CRAMP1L [ MEM ]
Gene Expression Viewer (FireBrowse)CRAMP1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57585
GTEX Portal (Tissue expression)CRAMP1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RY5
Splice isoforms : SwissVarQ96RY5
PhosPhoSitePlusQ96RY5
Domaine pattern : Prosite (Expaxy)SANT (PS51293)   
Domains : Interpro (EBI)SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)CRAMP1L
DMDM Disease mutations57585
Blocks (Seattle)CRAMP1L
SuperfamilyQ96RY5
Human Protein AtlasENSG00000007545
Peptide AtlasQ96RY5
HPRD13092
IPIIPI00924538   IPI00477543   IPI00970962   IPI00924950   IPI00925585   
Protein Interaction databases
DIP (DOE-UCLA)Q96RY5
IntAct (EBI)Q96RY5
FunCoupENSG00000007545
BioGRIDCRAMP1L
STRING (EMBL)CRAMP1L
ZODIACCRAMP1L
Ontologies - Pathways
QuickGOQ96RY5
Ontology : AmiGODNA binding  chromatin binding  nucleus  
Ontology : EGO-EBIDNA binding  chromatin binding  nucleus  
NDEx NetworkCRAMP1L
Atlas of Cancer Signalling NetworkCRAMP1L
Wikipedia pathwaysCRAMP1L
Orthology - Evolution
OrthoDB57585
GeneTree (enSembl)ENSG00000007545
Phylogenetic Trees/Animal Genes : TreeFamCRAMP1L
HOVERGENQ96RY5
HOGENOMQ96RY5
Homologs : HomoloGeneCRAMP1L
Homology/Alignments : Family Browser (UCSC)CRAMP1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRAMP1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRAMP1L
dbVarCRAMP1L
ClinVarCRAMP1L
1000_GenomesCRAMP1L 
Exome Variant ServerCRAMP1L
ExAC (Exome Aggregation Consortium)CRAMP1L (select the gene name)
Genetic variants : HAPMAP57585
Genomic Variants (DGV)CRAMP1L [DGVbeta]
DECIPHER (Syndromes)16:1664641-1727909  ENSG00000007545
CONAN: Copy Number AnalysisCRAMP1L 
Mutations
ICGC Data PortalCRAMP1L 
TCGA Data PortalCRAMP1L 
Broad Tumor PortalCRAMP1L
OASIS PortalCRAMP1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRAMP1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRAMP1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRAMP1L
DgiDB (Drug Gene Interaction Database)CRAMP1L
DoCM (Curated mutations)CRAMP1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRAMP1L (select a term)
intoGenCRAMP1L
Cancer3DCRAMP1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCRAMP1L
Genetic Testing Registry CRAMP1L
NextProtQ96RY5 [Medical]
TSGene57585
GENETestsCRAMP1L
Huge Navigator CRAMP1L [HugePedia]
snp3D : Map Gene to Disease57585
BioCentury BCIQCRAMP1L
ClinGenCRAMP1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57585
Chemical/Pharm GKB GenePA26861
Clinical trialCRAMP1L
Miscellaneous
canSAR (ICR)CRAMP1L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRAMP1L
EVEXCRAMP1L
GoPubMedCRAMP1L
iHOPCRAMP1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:00:17 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.