Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CRAT (carnitine O-acetyltransferase)

Identity

Alias (NCBI)CAT
CAT1
NBIA8
HGNC (Hugo) CRAT
HGNC Alias symbCAT1
HGNC Previous namecarnitine acetyltransferase
LocusID (NCBI) 1384
Atlas_Id 57238
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 129094794 and ends at 129110793 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRAT (9q34.11) / DOLPP1 (9q34.11)SPTAN1 (9q34.11) / CRAT (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CRAT   2342
Cards
Entrez_Gene (NCBI)CRAT    carnitine O-acetyltransferase
AliasesCAT; CAT1; NBIA8
GeneCards (Weizmann)CRAT
Ensembl hg19 (Hinxton)ENSG00000095321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095321 [Gene_View]  ENSG00000095321 [Sequence]  chr9:129094794-129110793 [Contig_View]  CRAT [Vega]
ICGC DataPortalENSG00000095321
TCGA cBioPortalCRAT
AceView (NCBI)CRAT
Genatlas (Paris)CRAT
SOURCE (Princeton)CRAT
Genetics Home Reference (NIH)CRAT
Genomic and cartography
GoldenPath hg38 (UCSC)CRAT  -     chr9:129094794-129110793 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRAT  -     9q34.11   [Description]    (hg19-Feb_2009)
GoldenPathCRAT - 9q34.11 [CytoView hg19]  CRAT - 9q34.11 [CytoView hg38]
ImmunoBaseENSG00000095321
genome Data Viewer NCBICRAT [Mapview hg19]  
OMIM600184   617917   
Gene and transcription
Genbank (Entrez)AK313931 AL523652 BC000723 BG741603 BG741927
RefSeq transcript (Entrez)NM_000755 NM_001257363 NM_001346546 NM_001346547 NM_001346548 NM_001346549 NM_004003 NM_144782
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRAT
Alternative Splicing GalleryENSG00000095321
Gene ExpressionCRAT [ NCBI-GEO ]   CRAT [ EBI - ARRAY_EXPRESS ]   CRAT [ SEEK ]   CRAT [ MEM ]
Gene Expression Viewer (FireBrowse)CRAT [ Firebrowse - Broad ]
GenevisibleExpression of CRAT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1384
GTEX Portal (Tissue expression)CRAT
Human Protein AtlasENSG00000095321-CRAT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43155   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43155  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43155
Splice isoforms : SwissVarP43155
PhosPhoSitePlusP43155
Domaine pattern : Prosite (Expaxy)ACYLTRANSF_C_1 (PS00439)    ACYLTRANSF_C_2 (PS00440)   
Domains : Interpro (EBI)Carn_acyl_trans    Cho/carn_acyl_trans    Cho/carn_acyl_trans_1    Cho/carn_acyl_trans_2   
Domain families : Pfam (Sanger)Carn_acyltransf (PF00755)   
Domain families : Pfam (NCBI)pfam00755   
Conserved Domain (NCBI)CRAT
Blocks (Seattle)CRAT
PDB (RSDB)1NM8    1S5O   
PDB Europe1NM8    1S5O   
PDB (PDBSum)1NM8    1S5O   
PDB (IMB)1NM8    1S5O   
Structural Biology KnowledgeBase1NM8    1S5O   
SCOP (Structural Classification of Proteins)1NM8    1S5O   
CATH (Classification of proteins structures)1NM8    1S5O   
SuperfamilyP43155
Human Protein Atlas [tissue]ENSG00000095321-CRAT [tissue]
Peptide AtlasP43155
IPIIPI00016457   IPI00514595   IPI00853033   IPI00029140   IPI00976207   IPI00791080   IPI00852692   IPI00855881   IPI00927749   
Protein Interaction databases
DIP (DOE-UCLA)P43155
IntAct (EBI)P43155
BioGRIDCRAT
STRING (EMBL)CRAT
ZODIACCRAT
Ontologies - Pathways
QuickGOP43155
Ontology : AmiGOacyl-CoA oxidase activity  carnitine O-acetyltransferase activity  carnitine O-acetyltransferase activity  carnitine O-acetyltransferase activity  mitochondrion  mitochondrion  mitochondrial inner membrane  peroxisome  peroxisome  peroxisomal matrix  endoplasmic reticulum  cytosol  protein targeting to peroxisome  carnitine O-octanoyltransferase activity  carnitine metabolic process, CoA-linked  carnitine metabolic process, CoA-linked  fatty acid beta-oxidation using acyl-CoA oxidase  fatty acid beta-oxidation using acyl-CoA oxidase  short-chain fatty acid metabolic process  medium-chain fatty acid metabolic process  
Ontology : EGO-EBIacyl-CoA oxidase activity  carnitine O-acetyltransferase activity  carnitine O-acetyltransferase activity  carnitine O-acetyltransferase activity  mitochondrion  mitochondrion  mitochondrial inner membrane  peroxisome  peroxisome  peroxisomal matrix  endoplasmic reticulum  cytosol  protein targeting to peroxisome  carnitine O-octanoyltransferase activity  carnitine metabolic process, CoA-linked  carnitine metabolic process, CoA-linked  fatty acid beta-oxidation using acyl-CoA oxidase  fatty acid beta-oxidation using acyl-CoA oxidase  short-chain fatty acid metabolic process  medium-chain fatty acid metabolic process  
Pathways : KEGGPeroxisome   
NDEx NetworkCRAT
Atlas of Cancer Signalling NetworkCRAT
Wikipedia pathwaysCRAT
Orthology - Evolution
OrthoDB1384
GeneTree (enSembl)ENSG00000095321
Phylogenetic Trees/Animal Genes : TreeFamCRAT
HOGENOMP43155
Homologs : HomoloGeneCRAT
Homology/Alignments : Family Browser (UCSC)CRAT
Gene fusions - Rearrangements
Fusion : QuiverCRAT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRAT [hg38]
dbVarCRAT
ClinVarCRAT
MonarchCRAT
1000_GenomesCRAT 
Exome Variant ServerCRAT
GNOMAD BrowserENSG00000095321
Varsome BrowserCRAT
Genomic Variants (DGV)CRAT [DGVbeta]
DECIPHERCRAT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRAT 
Mutations
ICGC Data PortalCRAT 
TCGA Data PortalCRAT 
Broad Tumor PortalCRAT
OASIS PortalCRAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRAT  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCRAT
Mutations and Diseases : HGMDCRAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRAT
DgiDB (Drug Gene Interaction Database)CRAT
DoCM (Curated mutations)CRAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRAT (select a term)
intoGenCRAT
Cancer3DCRAT(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600184    617917   
Orphanet
DisGeNETCRAT
MedgenCRAT
Genetic Testing Registry CRAT
NextProtP43155 [Medical]
GENETestsCRAT
Target ValidationCRAT
Huge Navigator CRAT [HugePedia]
ClinGenCRAT
Clinical trials, drugs, therapy
MyCancerGenomeCRAT
Protein Interactions : CTD
Pharm GKB GenePA26862
PharosP43155
Clinical trialCRAT
Miscellaneous
canSAR (ICR)CRAT (select the gene name)
HarmonizomeCRAT
DataMed IndexCRAT
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCRAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:16:50 CET 2021
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