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CRAT (carnitine O-acetyltransferase)

Identity

Other aliasCAT
CAT1
HGNC (Hugo) CRAT
LocusID (NCBI) 1384
Atlas_Id 57238
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 129094794 and ends at 129110798 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRAT (9q34.11) / DOLPP1 (9q34.11)SPTAN1 (9q34.11) / CRAT (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRAT   2342
Cards
Entrez_Gene (NCBI)CRAT  1384  carnitine O-acetyltransferase
AliasesCAT; CAT1
GeneCards (Weizmann)CRAT
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:129094794-129110798 [Contig_View]  CRAT [Vega]
TCGA cBioPortalCRAT
AceView (NCBI)CRAT
Genatlas (Paris)CRAT
WikiGenes1384
SOURCE (Princeton)CRAT
Genetics Home Reference (NIH)CRAT
Genomic and cartography
GoldenPath hg38 (UCSC)CRAT  -     chr9:129094794-129110798 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRAT  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblCRAT - 9q34.11 [CytoView hg19]  CRAT - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBICRAT [Mapview hg19]  CRAT [Mapview hg38]
OMIM600184   
Gene and transcription
Genbank (Entrez)AK313931 AL523652 BC000723 BG741603 BG741927
RefSeq transcript (Entrez)NM_000755 NM_001257363 NM_001346546 NM_001346547 NM_001346548 NM_001346549 NM_004003 NM_144782
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRAT
Cluster EST : UnigeneHs.12068 [ NCBI ]
CGAP (NCI)Hs.12068
Gene ExpressionCRAT [ NCBI-GEO ]   CRAT [ EBI - ARRAY_EXPRESS ]   CRAT [ SEEK ]   CRAT [ MEM ]
Gene Expression Viewer (FireBrowse)CRAT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1384
GTEX Portal (Tissue expression)CRAT
Protein : pattern, domain, 3D structure
UniProt/SwissProtP43155   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP43155  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP43155
Splice isoforms : SwissVarP43155
Catalytic activity : Enzyme2.3.1.7 [ Enzyme-Expasy ]   2.3.1.72.3.1.7 [ IntEnz-EBI ]   2.3.1.7 [ BRENDA ]   2.3.1.7 [ KEGG ]   
PhosPhoSitePlusP43155
Domaine pattern : Prosite (Expaxy)ACYLTRANSF_C_1 (PS00439)    ACYLTRANSF_C_2 (PS00440)   
Domains : Interpro (EBI)Carn_acyl_trans   
Domain families : Pfam (Sanger)Carn_acyltransf (PF00755)   
Domain families : Pfam (NCBI)pfam00755   
Conserved Domain (NCBI)CRAT
DMDM Disease mutations1384
Blocks (Seattle)CRAT
PDB (SRS)1NM8    1S5O   
PDB (PDBSum)1NM8    1S5O   
PDB (IMB)1NM8    1S5O   
PDB (RSDB)1NM8    1S5O   
Structural Biology KnowledgeBase1NM8    1S5O   
SCOP (Structural Classification of Proteins)1NM8    1S5O   
CATH (Classification of proteins structures)1NM8    1S5O   
SuperfamilyP43155
Peptide AtlasP43155
IPIIPI00016457   IPI00514595   IPI00853033   IPI00029140   IPI00976207   IPI00791080   IPI00852692   IPI00855881   IPI00927749   
Protein Interaction databases
DIP (DOE-UCLA)P43155
IntAct (EBI)P43155
BioGRIDCRAT
STRING (EMBL)CRAT
ZODIACCRAT
Ontologies - Pathways
QuickGOP43155
Ontology : AmiGOcarnitine O-acetyltransferase activity  carnitine O-acetyltransferase activity  receptor binding  mitochondrion  mitochondrion  mitochondrial inner membrane  peroxisome  peroxisomal matrix  endoplasmic reticulum  carnitine metabolic process, CoA-linked  fatty acid beta-oxidation using acyl-CoA oxidase  
Ontology : EGO-EBIcarnitine O-acetyltransferase activity  carnitine O-acetyltransferase activity  receptor binding  mitochondrion  mitochondrion  mitochondrial inner membrane  peroxisome  peroxisomal matrix  endoplasmic reticulum  carnitine metabolic process, CoA-linked  fatty acid beta-oxidation using acyl-CoA oxidase  
Pathways : KEGGAlanine and aspartate metabolism   
NDEx NetworkCRAT
Atlas of Cancer Signalling NetworkCRAT
Wikipedia pathwaysCRAT
Orthology - Evolution
OrthoDB1384
Phylogenetic Trees/Animal Genes : TreeFamCRAT
HOVERGENP43155
HOGENOMP43155
Homologs : HomoloGeneCRAT
Homology/Alignments : Family Browser (UCSC)CRAT
Gene fusions - Rearrangements
Fusion : QuiverCRAT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRAT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRAT
dbVarCRAT
ClinVarCRAT
1000_GenomesCRAT 
Exome Variant ServerCRAT
Genetic variants : HAPMAP1384
Genomic Variants (DGV)CRAT [DGVbeta]
DECIPHERCRAT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRAT 
Mutations
ICGC Data PortalCRAT 
TCGA Data PortalCRAT 
Broad Tumor PortalCRAT
OASIS PortalCRAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRAT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRAT
DgiDB (Drug Gene Interaction Database)CRAT
DoCM (Curated mutations)CRAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRAT (select a term)
intoGenCRAT
Cancer3DCRAT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600184   
Orphanet
DisGeNETCRAT
MedgenCRAT
Genetic Testing Registry CRAT
NextProtP43155 [Medical]
TSGene1384
GENETestsCRAT
Target ValidationCRAT
Huge Navigator CRAT [HugePedia]
snp3D : Map Gene to Disease1384
BioCentury BCIQCRAT
ClinGenCRAT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1384
Chemical/Pharm GKB GenePA26862
Clinical trialCRAT
Miscellaneous
canSAR (ICR)CRAT (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRAT
EVEXCRAT
GoPubMedCRAT
iHOPCRAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 28 13:07:44 CET 2018

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