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CRB1 (crumbs family member 1, photoreceptor morphogenesis associated)

Identity

Other namesLCA8
RP12
HGNC (Hugo) CRB1
LocusID (NCBI) 23418
Atlas_Id 51146
Location 1q31.3
Location_base_pair Starts at 197237334 and ends at 197447585 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
CRB1 1q31.3 / IGFN1 1q32.1NEK7 1q31.3 / CRB1 1q31.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRB1   2343
Cards
Entrez_Gene (NCBI)CRB1  23418  crumbs family member 1, photoreceptor morphogenesis associated
GeneCards (Weizmann)CRB1
Ensembl hg19 (Hinxton)ENSG00000134376 [Gene_View]  chr1:197237334-197447585 [Contig_View]  CRB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134376 [Gene_View]  chr1:197237334-197447585 [Contig_View]  CRB1 [Vega]
ICGC DataPortalENSG00000134376
TCGA cBioPortalCRB1
AceView (NCBI)CRB1
Genatlas (Paris)CRB1
WikiGenes23418
SOURCE (Princeton)CRB1
Genomic and cartography
GoldenPath hg19 (UCSC)CRB1  -     chr1:197237334-197447585 +  1q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRB1  -     1q31.3   [Description]    (hg38-Dec_2013)
EnsemblCRB1 - 1q31.3 [CytoView hg19]  CRB1 - 1q31.3 [CytoView hg38]
Mapping of homologs : NCBICRB1 [Mapview hg19]  CRB1 [Mapview hg38]
OMIM172870   600105   604210   613835   
Gene and transcription
Genbank (Entrez)AB208923 AF154671 AJ748821 AK289733 AK299367
RefSeq transcript (Entrez)NM_001193640 NM_001257965 NM_001257966 NM_012076 NM_201253
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_008483 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)CRB1
Cluster EST : UnigeneHs.126135 [ NCBI ]
CGAP (NCI)Hs.126135
Alternative Splicing : Fast-db (Paris)GSHG0001305
Alternative Splicing GalleryENSG00000134376
Gene ExpressionCRB1 [ NCBI-GEO ]     CRB1 [ SEEK ]   CRB1 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)23418
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82279 (Uniprot)
NextProtP82279  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82279
Splice isoforms : SwissVarP82279 (Swissvar)
PhosPhoSitePlusP82279
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    LAM_G_DOMAIN (PS50025)   
Domains : Interpro (EBI)ConA-like_dom    EG-like_dom    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Growth_fac_rcpt_N_dom    Laminin_G   
Domain families : Pfam (Sanger)EGF (PF00008)    hEGF (PF12661)    Laminin_G_2 (PF02210)   
Domain families : Pfam (NCBI)pfam00008    pfam12661    pfam02210   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  LamG (SM00282)  
DMDM Disease mutations23418
Blocks (Seattle)CRB1
PDB (SRS)4UU5   
PDB (PDBSum)4UU5   
PDB (IMB)4UU5   
PDB (RSDB)4UU5   
Structural Biology KnowledgeBase4UU5   
SCOP (Structural Classification of Proteins)4UU5   
CATH (Classification of proteins structures)4UU5   
Human Protein AtlasENSG00000134376
Peptide AtlasP82279
HPRD05019
IPIIPI00397504   IPI00015785   IPI00607552   IPI00607891   IPI00922394   IPI00883900   IPI00942642   IPI01009270   IPI01025325   IPI00556358   
Protein Interaction databases
DIP (DOE-UCLA)P82279
IntAct (EBI)P82279
FunCoupENSG00000134376
BioGRIDCRB1
IntegromeDBCRB1
STRING (EMBL)CRB1
ZODIACCRB1
Ontologies - Pathways
QuickGOP82279
Ontology : AmiGOcalcium ion binding  protein binding  extracellular region  microvillus  plasma membrane organization  establishment or maintenance of cell polarity  cell-cell signaling  integral component of membrane  apical plasma membrane  eye photoreceptor cell development  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular region  microvillus  plasma membrane organization  establishment or maintenance of cell polarity  cell-cell signaling  integral component of membrane  apical plasma membrane  eye photoreceptor cell development  
Pathways : KEGGHippo signaling pathway   
Protein Interaction DatabaseCRB1
Atlas of Cancer Signalling NetworkCRB1
Wikipedia pathwaysCRB1
Orthology - Evolution
OrthoDB23418
GeneTree (enSembl)ENSG00000134376
Phylogenetic Trees/Animal Genes : TreeFamCRB1
Homologs : HomoloGeneCRB1
Homology/Alignments : Family Browser (UCSC)CRB1
Gene fusions - Rearrangements
Fusion: TCGACRB1 1q31.3 IGFN1 1q32.1 LGG
Fusion: TCGANEK7 1q31.3 CRB1 1q31.3 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerCRB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRB1
dbVarCRB1
ClinVarCRB1
1000_GenomesCRB1 
Exome Variant ServerCRB1
Exome Aggregation Consortium (ExAC)ENSG00000134376
SNP (GeneSNP Utah)CRB1
SNP : HGBaseCRB1
Genetic variants : HAPMAPCRB1
Genomic Variants (DGV)CRB1 [DGVbeta]
Mutations
ICGC Data PortalCRB1 
TCGA Data PortalCRB1 
Tumor PortalCRB1
TCGA Copy Number PortalCRB1
Somatic Mutations in Cancer : COSMICCRB1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CRB1
DgiDB (Drug Gene Interaction Database)CRB1
DoCM (Curated mutations)CRB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRB1 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:197237334-197447585
CONAN: Copy Number AnalysisCRB1 
Mutations and Diseases : HGMDCRB1
OMIM172870    600105    604210    613835   
MedgenCRB1
NextProtP82279 [Medical]
TSGene23418
GENETestsCRB1
Huge Navigator CRB1 [HugePedia]  CRB1 [HugeCancerGEM]
snp3D : Map Gene to Disease23418
BioCentury BCIQCRB1
General knowledge
Chemical/Protein Interactions : CTD23418
Chemical/Pharm GKB GenePA26863
Clinical trialCRB1
Other databases
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRB1
GoPubMedCRB1
iHOPCRB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:23:38 CET 2016

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