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CRCT1 (cysteine-rich C-terminal 1)

Identity

Alias_namesC1orf42
chromosome 1 open reading frame 42
cysteine-rich C-terminal 1
Alias_symbol (synonym)NICE-1
Other alias
HGNC (Hugo) CRCT1
LocusID (NCBI) 54544
Atlas_Id 62080
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152486978 and ends at 152488481 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SUSD4 (1q41) / CRCT1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRCT1   29875
Cards
Entrez_Gene (NCBI)CRCT1  54544  cysteine-rich C-terminal 1
AliasesC1orf42; NICE-1
GeneCards (Weizmann)CRCT1
Ensembl hg19 (Hinxton)ENSG00000169509 [Gene_View]  chr1:152486978-152488481 [Contig_View]  CRCT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169509 [Gene_View]  chr1:152486978-152488481 [Contig_View]  CRCT1 [Vega]
ICGC DataPortalENSG00000169509
TCGA cBioPortalCRCT1
AceView (NCBI)CRCT1
Genatlas (Paris)CRCT1
WikiGenes54544
SOURCE (Princeton)CRCT1
Genetics Home Reference (NIH)CRCT1
Genomic and cartography
GoldenPath hg19 (UCSC)CRCT1  -     chr1:152486978-152488481 +  1q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRCT1  -     1q21.3   [Description]    (hg38-Dec_2013)
EnsemblCRCT1 - 1q21.3 [CytoView hg19]  CRCT1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBICRCT1 [Mapview hg19]  CRCT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ243662 BC119710 CR457218
RefSeq transcript (Entrez)NM_019060
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)CRCT1
Cluster EST : UnigeneHs.110196 [ NCBI ]
CGAP (NCI)Hs.110196
Alternative Splicing GalleryENSG00000169509
Gene ExpressionCRCT1 [ NCBI-GEO ]   CRCT1 [ EBI - ARRAY_EXPRESS ]   CRCT1 [ SEEK ]   CRCT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRCT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54544
GTEX Portal (Tissue expression)CRCT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGL9
Splice isoforms : SwissVarQ9UGL9
PhosPhoSitePlusQ9UGL9
Domains : Interpro (EBI)SPRR/LCE   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CRCT1
DMDM Disease mutations54544
Blocks (Seattle)CRCT1
SuperfamilyQ9UGL9
Human Protein AtlasENSG00000169509
Peptide AtlasQ9UGL9
HPRD16635
IPIIPI00005422   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGL9
IntAct (EBI)Q9UGL9
FunCoupENSG00000169509
BioGRIDCRCT1
STRING (EMBL)CRCT1
ZODIACCRCT1
Ontologies - Pathways
QuickGOQ9UGL9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCRCT1
Atlas of Cancer Signalling NetworkCRCT1
Wikipedia pathwaysCRCT1
Orthology - Evolution
OrthoDB54544
GeneTree (enSembl)ENSG00000169509
Phylogenetic Trees/Animal Genes : TreeFamCRCT1
HOVERGENQ9UGL9
HOGENOMQ9UGL9
Homologs : HomoloGeneCRCT1
Homology/Alignments : Family Browser (UCSC)CRCT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRCT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRCT1
dbVarCRCT1
ClinVarCRCT1
1000_GenomesCRCT1 
Exome Variant ServerCRCT1
ExAC (Exome Aggregation Consortium)CRCT1 (select the gene name)
Genetic variants : HAPMAP54544
Genomic Variants (DGV)CRCT1 [DGVbeta]
DECIPHER (Syndromes)1:152486978-152488481  ENSG00000169509
CONAN: Copy Number AnalysisCRCT1 
Mutations
ICGC Data PortalCRCT1 
TCGA Data PortalCRCT1 
Broad Tumor PortalCRCT1
OASIS PortalCRCT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRCT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRCT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRCT1
DgiDB (Drug Gene Interaction Database)CRCT1
DoCM (Curated mutations)CRCT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRCT1 (select a term)
intoGenCRCT1
Cancer3DCRCT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCRCT1
Genetic Testing Registry CRCT1
NextProtQ9UGL9 [Medical]
TSGene54544
GENETestsCRCT1
Huge Navigator CRCT1 [HugePedia]
snp3D : Map Gene to Disease54544
BioCentury BCIQCRCT1
ClinGenCRCT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54544
Chemical/Pharm GKB GenePA162382812
Clinical trialCRCT1
Miscellaneous
canSAR (ICR)CRCT1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRCT1
EVEXCRCT1
GoPubMedCRCT1
iHOPCRCT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:18 CET 2017

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