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CRCT1 (cysteine rich C-terminal 1)

Identity

Other aliasC1orf42
NICE-1
NICE1
HGNC (Hugo) CRCT1
LocusID (NCBI) 54544
Atlas_Id 56809
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152514502 and ends at 152516005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SUSD4 (1q41) / CRCT1 (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRCT1   29875
Cards
Entrez_Gene (NCBI)CRCT1  54544  cysteine rich C-terminal 1
AliasesC1orf42; NICE-1; NICE1
GeneCards (Weizmann)CRCT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:152514502-152516005 [Contig_View]  CRCT1 [Vega]
TCGA cBioPortalCRCT1
AceView (NCBI)CRCT1
Genatlas (Paris)CRCT1
WikiGenes54544
SOURCE (Princeton)CRCT1
Genetics Home Reference (NIH)CRCT1
Genomic and cartography
GoldenPath hg38 (UCSC)CRCT1  -     chr1:152514502-152516005 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRCT1  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblCRCT1 - 1q21.3 [CytoView hg19]  CRCT1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBICRCT1 [Mapview hg19]  CRCT1 [Mapview hg38]
OMIM617426   
Gene and transcription
Genbank (Entrez)AJ243662 BC119710 CR457218
RefSeq transcript (Entrez)NM_019060
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRCT1
Cluster EST : UnigeneHs.110196 [ NCBI ]
CGAP (NCI)Hs.110196
Gene ExpressionCRCT1 [ NCBI-GEO ]   CRCT1 [ EBI - ARRAY_EXPRESS ]   CRCT1 [ SEEK ]   CRCT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRCT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54544
GTEX Portal (Tissue expression)CRCT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGL9
Splice isoforms : SwissVarQ9UGL9
PhosPhoSitePlusQ9UGL9
Domains : Interpro (EBI)NICE-1   
Domain families : Pfam (Sanger)NICE-1 (PF15845)   
Domain families : Pfam (NCBI)pfam15845   
Conserved Domain (NCBI)CRCT1
DMDM Disease mutations54544
Blocks (Seattle)CRCT1
SuperfamilyQ9UGL9
Peptide AtlasQ9UGL9
IPIIPI00005422   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGL9
IntAct (EBI)Q9UGL9
BioGRIDCRCT1
STRING (EMBL)CRCT1
ZODIACCRCT1
Ontologies - Pathways
QuickGOQ9UGL9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCRCT1
Atlas of Cancer Signalling NetworkCRCT1
Wikipedia pathwaysCRCT1
Orthology - Evolution
OrthoDB54544
Phylogenetic Trees/Animal Genes : TreeFamCRCT1
HOVERGENQ9UGL9
HOGENOMQ9UGL9
Homologs : HomoloGeneCRCT1
Homology/Alignments : Family Browser (UCSC)CRCT1
Gene fusions - Rearrangements
Tumor Fusion PortalCRCT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRCT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRCT1
dbVarCRCT1
ClinVarCRCT1
1000_GenomesCRCT1 
Exome Variant ServerCRCT1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP54544
Genomic Variants (DGV)CRCT1 [DGVbeta]
DECIPHERCRCT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRCT1 
Mutations
ICGC Data PortalCRCT1 
TCGA Data PortalCRCT1 
Broad Tumor PortalCRCT1
OASIS PortalCRCT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRCT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRCT1
BioMutasearch CRCT1
DgiDB (Drug Gene Interaction Database)CRCT1
DoCM (Curated mutations)CRCT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRCT1 (select a term)
intoGenCRCT1
Cancer3DCRCT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617426   
Orphanet
DisGeNETCRCT1
MedgenCRCT1
Genetic Testing Registry CRCT1
NextProtQ9UGL9 [Medical]
TSGene54544
GENETestsCRCT1
Target ValidationCRCT1
Huge Navigator CRCT1 [HugePedia]
snp3D : Map Gene to Disease54544
BioCentury BCIQCRCT1
ClinGenCRCT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54544
Chemical/Pharm GKB GenePA162382812
Clinical trialCRCT1
Miscellaneous
canSAR (ICR)CRCT1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRCT1
EVEXCRCT1
GoPubMedCRCT1
iHOPCRCT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:08:58 CET 2017

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