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CREBRF (CREB3 regulatory factor)

Identity

Alias_namesC5orf41
chromosome 5 open reading frame 41
Alias_symbol (synonym)LRF
Other alias
HGNC (Hugo) CREBRF
LocusID (NCBI) 153222
Atlas_Id 62081
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 172483355 and ends at 172519333 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CREBRF (5q35.1) / CREBRF (5q35.1)CREBRF (5q35.1) / SLIT3 (5q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CREBRF   24050
Cards
Entrez_Gene (NCBI)CREBRF  153222  CREB3 regulatory factor
AliasesC5orf41; LRF
GeneCards (Weizmann)CREBRF
Ensembl hg19 (Hinxton)ENSG00000164463 [Gene_View]  chr5:172483355-172519333 [Contig_View]  CREBRF [Vega]
Ensembl hg38 (Hinxton)ENSG00000164463 [Gene_View]  chr5:172483355-172519333 [Contig_View]  CREBRF [Vega]
ICGC DataPortalENSG00000164463
TCGA cBioPortalCREBRF
AceView (NCBI)CREBRF
Genatlas (Paris)CREBRF
WikiGenes153222
SOURCE (Princeton)CREBRF
Genetics Home Reference (NIH)CREBRF
Genomic and cartography
GoldenPath hg19 (UCSC)CREBRF  -     chr5:172483355-172519333 +  5q35.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CREBRF  -     5q35.1   [Description]    (hg38-Dec_2013)
EnsemblCREBRF - 5q35.1 [CytoView hg19]  CREBRF - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBICREBRF [Mapview hg19]  CREBRF [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122675 AK124117 AK291677 AK297424 AK300043
RefSeq transcript (Entrez)NM_001168393 NM_001168394 NM_153607
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)CREBRF
Cluster EST : UnigeneHs.484195 [ NCBI ]
CGAP (NCI)Hs.484195
Alternative Splicing GalleryENSG00000164463
Gene ExpressionCREBRF [ NCBI-GEO ]   CREBRF [ EBI - ARRAY_EXPRESS ]   CREBRF [ SEEK ]   CREBRF [ MEM ]
Gene Expression Viewer (FireBrowse)CREBRF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153222
GTEX Portal (Tissue expression)CREBRF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUR6
Splice isoforms : SwissVarQ8IUR6
PhosPhoSitePlusQ8IUR6
Domaine pattern : Prosite (Expaxy)BZIP_BASIC (PS00036)   
Domains : Interpro (EBI)bZIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CREBRF
DMDM Disease mutations153222
Blocks (Seattle)CREBRF
SuperfamilyQ8IUR6
Human Protein AtlasENSG00000164463
Peptide AtlasQ8IUR6
HPRD17308
IPIIPI00871155   IPI00855699   IPI01015511   IPI01013068   IPI00910469   IPI00292678   IPI01018876   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUR6
IntAct (EBI)Q8IUR6
FunCoupENSG00000164463
BioGRIDCREBRF
STRING (EMBL)CREBRF
ZODIACCREBRF
Ontologies - Pathways
QuickGOQ8IUR6
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  transport  response to unfolded protein  nuclear body  positive regulation of intracellular transport  response to endoplasmic reticulum stress  maternal behavior  sequence-specific DNA binding  positive regulation of protein catabolic process  positive regulation of protein transport  negative regulation of endoplasmic reticulum unfolded protein response  negative regulation of glucocorticoid mediated signaling pathway  positive regulation of prolactin signaling pathway  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  transport  response to unfolded protein  nuclear body  positive regulation of intracellular transport  response to endoplasmic reticulum stress  maternal behavior  sequence-specific DNA binding  positive regulation of protein catabolic process  positive regulation of protein transport  negative regulation of endoplasmic reticulum unfolded protein response  negative regulation of glucocorticoid mediated signaling pathway  positive regulation of prolactin signaling pathway  
NDEx NetworkCREBRF
Atlas of Cancer Signalling NetworkCREBRF
Wikipedia pathwaysCREBRF
Orthology - Evolution
OrthoDB153222
GeneTree (enSembl)ENSG00000164463
Phylogenetic Trees/Animal Genes : TreeFamCREBRF
HOVERGENQ8IUR6
HOGENOMQ8IUR6
Homologs : HomoloGeneCREBRF
Homology/Alignments : Family Browser (UCSC)CREBRF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCREBRF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CREBRF
dbVarCREBRF
ClinVarCREBRF
1000_GenomesCREBRF 
Exome Variant ServerCREBRF
ExAC (Exome Aggregation Consortium)CREBRF (select the gene name)
Genetic variants : HAPMAP153222
Genomic Variants (DGV)CREBRF [DGVbeta]
DECIPHER (Syndromes)5:172483355-172519333  ENSG00000164463
CONAN: Copy Number AnalysisCREBRF 
Mutations
ICGC Data PortalCREBRF 
TCGA Data PortalCREBRF 
Broad Tumor PortalCREBRF
OASIS PortalCREBRF [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCREBRF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CREBRF
DgiDB (Drug Gene Interaction Database)CREBRF
DoCM (Curated mutations)CREBRF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CREBRF (select a term)
intoGenCREBRF
Cancer3DCREBRF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCREBRF
Genetic Testing Registry CREBRF
NextProtQ8IUR6 [Medical]
TSGene153222
GENETestsCREBRF
Huge Navigator CREBRF [HugePedia]
snp3D : Map Gene to Disease153222
BioCentury BCIQCREBRF
ClinGenCREBRF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153222
Chemical/Pharm GKB GenePA162380187
Clinical trialCREBRF
Miscellaneous
canSAR (ICR)CREBRF (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCREBRF
EVEXCREBRF
GoPubMedCREBRF
iHOPCREBRF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:18 CET 2017

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