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CREBZF (CREB/ATF bZIP transcription factor)

Identity

Alias_symbol (synonym)ZF
Other aliasSMILE
HGNC (Hugo) CREBZF
LocusID (NCBI) 58487
Atlas_Id 62082
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 85657564 and ends at 85665138 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CREBZF (11q14.1) / CREBZF (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CREBZF   24905
Cards
Entrez_Gene (NCBI)CREBZF  58487  CREB/ATF bZIP transcription factor
AliasesSMILE; ZF
GeneCards (Weizmann)CREBZF
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:85657564-85665138 [Contig_View]  CREBZF [Vega]
TCGA cBioPortalCREBZF
AceView (NCBI)CREBZF
Genatlas (Paris)CREBZF
WikiGenes58487
SOURCE (Princeton)CREBZF
Genetics Home Reference (NIH)CREBZF
Genomic and cartography
GoldenPath hg38 (UCSC)CREBZF  -     chr11:85657564-85665138 -  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CREBZF  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblCREBZF - 11q14.1 [CytoView hg19]  CREBZF - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBICREBZF [Mapview hg19]  CREBZF [Mapview hg38]
OMIM606444   
Gene and transcription
Genbank (Entrez)AF039942 AK313471 AL045702 AL110236 BC060807
RefSeq transcript (Entrez)NM_001039618 NM_021212
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CREBZF
Cluster EST : UnigeneHs.714910 [ NCBI ]
CGAP (NCI)Hs.714910
Gene ExpressionCREBZF [ NCBI-GEO ]   CREBZF [ EBI - ARRAY_EXPRESS ]   CREBZF [ SEEK ]   CREBZF [ MEM ]
Gene Expression Viewer (FireBrowse)CREBZF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58487
GTEX Portal (Tissue expression)CREBZF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS37
Splice isoforms : SwissVarQ9NS37
PhosPhoSitePlusQ9NS37
Domains : Interpro (EBI)bZIP   
Domain families : Pfam (Sanger)bZIP_1 (PF00170)   
Domain families : Pfam (NCBI)pfam00170   
Conserved Domain (NCBI)CREBZF
DMDM Disease mutations58487
Blocks (Seattle)CREBZF
SuperfamilyQ9NS37
Peptide AtlasQ9NS37
HPRD07340
IPIIPI00164768   IPI00984109   IPI00974318   IPI00977534   IPI00975520   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS37
IntAct (EBI)Q9NS37
BioGRIDCREBZF
STRING (EMBL)CREBZF
ZODIACCREBZF
Ontologies - Pathways
QuickGOQ9NS37
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  mitochondrion  transcription, DNA-templated  response to virus  identical protein binding  sequence-specific DNA binding  negative regulation of gene expression, epigenetic  negative regulation of transcription, DNA-templated  regulation of sequence-specific DNA binding transcription factor activity  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  mitochondrion  transcription, DNA-templated  response to virus  identical protein binding  sequence-specific DNA binding  negative regulation of gene expression, epigenetic  negative regulation of transcription, DNA-templated  regulation of sequence-specific DNA binding transcription factor activity  
NDEx NetworkCREBZF
Atlas of Cancer Signalling NetworkCREBZF
Wikipedia pathwaysCREBZF
Orthology - Evolution
OrthoDB58487
Phylogenetic Trees/Animal Genes : TreeFamCREBZF
HOVERGENQ9NS37
HOGENOMQ9NS37
Homologs : HomoloGeneCREBZF
Homology/Alignments : Family Browser (UCSC)CREBZF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCREBZF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CREBZF
dbVarCREBZF
ClinVarCREBZF
1000_GenomesCREBZF 
Exome Variant ServerCREBZF
ExAC (Exome Aggregation Consortium)CREBZF (select the gene name)
Genetic variants : HAPMAP58487
Genomic Variants (DGV)CREBZF [DGVbeta]
DECIPHERCREBZF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCREBZF 
Mutations
ICGC Data PortalCREBZF 
TCGA Data PortalCREBZF 
Broad Tumor PortalCREBZF
OASIS PortalCREBZF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCREBZF  [overview]  [genome browser]  [tissue],/A>&fb3p; [distribution]  
Mutations and Diseases : HGMDCREBZF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CREBZF
DgiDB (Drug Gene Interaction Database)CREBZF
DoCM (Curated mutations)CREBZF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CREBZF (select a term)
intoGenCREBZF
Cancer3DCREBZF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606444   
Orphanet
MedgenCREBZF
Genetic Testing Registry CREBZF
NextProtQ9NS37 [Medical]
TSGene58487
GENETestsCREBZF
Target ValidationCREBZF
Huge Navigator CREBZF [HugePedia]
snp3D : Map Gene to Disease58487
BioCentury BCIQCREBZF
ClinGenCREBZF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58487
Chemical/Pharm GKB GenePA162382821
Clinical trialCREBZF
Miscellaneous
canSAR (ICR)CREBZF (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCREBZF
EVEXCREBZF
GoPubMedCREBZF
iHOPCREBZF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:21 CEST 2017

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