Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CRELD2 (cysteine rich with EGF like domains 2)

Identity

Alias_namescysteine-rich with EGF-like domains 2
cysteine rich with EGF-like domains 2
Alias_symbol (synonym)MGC11256
Other alias-
HGNC (Hugo) CRELD2
LocusID (NCBI) 79174
Atlas_Id 62085
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 49918630 and ends at 49927540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CRELD2 (22q13.33) / P2RX4 (12q24.31)PIM3 (22q13.33) / CRELD2 (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRELD2   28150
Cards
Entrez_Gene (NCBI)CRELD2  79174  cysteine rich with EGF like domains 2
Aliases
GeneCards (Weizmann)CRELD2
Ensembl hg19 (Hinxton)ENSG00000184164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184164 [Gene_View]  chr22:49918630-49927540 [Contig_View]  CRELD2 [Vega]
ICGC DataPortalENSG00000184164
TCGA cBioPortalCRELD2
AceView (NCBI)CRELD2
Genatlas (Paris)CRELD2
WikiGenes79174
SOURCE (Princeton)CRELD2
Genetics Home Reference (NIH)CRELD2
Genomic and cartography
GoldenPath hg38 (UCSC)CRELD2  -     chr22:49918630-49927540 +  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRELD2  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblCRELD2 - 22q13.33 [CytoView hg19]  CRELD2 - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBICRELD2 [Mapview hg19]  CRELD2 [Mapview hg38]
OMIM607171   
Gene and transcription
Genbank (Entrez)AJ968414 AK126178 AK225930 AK308535 AK308692
RefSeq transcript (Entrez)NM_001135101 NM_001284317 NM_001284318 NM_024324
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRELD2
Cluster EST : UnigeneHs.211282 [ NCBI ]
CGAP (NCI)Hs.211282
Alternative Splicing GalleryENSG00000184164
Gene ExpressionCRELD2 [ NCBI-GEO ]   CRELD2 [ EBI - ARRAY_EXPRESS ]   CRELD2 [ SEEK ]   CRELD2 [ MEM ]
Gene Expression Viewer (FireBrowse)CRELD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79174
GTEX Portal (Tissue expression)CRELD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXH1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXH1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXH1
Splice isoforms : SwissVarQ6UXH1
PhosPhoSitePlusQ6UXH1
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Furin_repeat    Growth_fac_rcpt_    Laminin_EGF   
Domain families : Pfam (Sanger)EGF_CA (PF07645)   
Domain families : Pfam (NCBI)pfam07645   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  FU (SM00261)  
Conserved Domain (NCBI)CRELD2
DMDM Disease mutations79174
Blocks (Seattle)CRELD2
SuperfamilyQ6UXH1
Human Protein AtlasENSG00000184164
Peptide AtlasQ6UXH1
HPRD08455
IPIIPI00419731   IPI00386754   IPI00797918   IPI00794793   IPI00794252   IPI00796204   IPI00879774   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXH1
IntAct (EBI)Q6UXH1
FunCoupENSG00000184164
BioGRIDCRELD2
STRING (EMBL)CRELD2
ZODIACCRELD2
Ontologies - Pathways
QuickGOQ6UXH1
Ontology : AmiGOcalcium ion binding  protein binding  extracellular space  endoplasmic reticulum  Golgi apparatus  
Ontology : EGO-EBIcalcium ion binding  protein binding  extracellular space  endoplasmic reticulum  Golgi apparatus  
NDEx NetworkCRELD2
Atlas of Cancer Signalling NetworkCRELD2
Wikipedia pathwaysCRELD2
Orthology - Evolution
OrthoDB79174
GeneTree (enSembl)ENSG00000184164
Phylogenetic Trees/Animal Genes : TreeFamCRELD2
HOVERGENQ6UXH1
HOGENOMQ6UXH1
Homologs : HomoloGeneCRELD2
Homology/Alignments : Family Browser (UCSC)CRELD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRELD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRELD2
dbVarCRELD2
ClinVarCRELD2
1000_GenomesCRELD2 
Exome Variant ServerCRELD2
ExAC (Exome Aggregation Consortium)CRELD2 (select the gene name)
Genetic variants : HAPMAP79174
Genomic Variants (DGV)CRELD2 [DGVbeta]
DECIPHERCRELD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRELD2 
Mutations
ICGC Data PortalCRELD2 
TCGA Data PortalCRELD2 
Broad Tumor PortalCRELD2
OASIS PortalCRELD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRELD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRELD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRELD2
DgiDB (Drug Gene Interaction Database)CRELD2
DoCM (Curated mutations)CRELD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRELD2 (select a term)
intoGenCRELD2
Cancer3DCRELD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607171   
Orphanet
MedgenCRELD2
Genetic Testing Registry CRELD2
NextProtQ6UXH1 [Medical]
TSGene79174
GENETestsCRELD2
Target ValidationCRELD2
Huge Navigator CRELD2 [HugePedia]
snp3D : Map Gene to Disease79174
BioCentury BCIQCRELD2
ClinGenCRELD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79174
Chemical/Pharm GKB GenePA142672079
Clinical trialCRELD2
Miscellaneous
canSAR (ICR)CRELD2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRELD2
EVEXCRELD2
GoPubMedCRELD2
iHOPCRELD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:05:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.