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CRIP1 (cysteine rich protein 1)

Identity

Alias_namescysteine-rich protein 1 (intestinal)
Alias_symbol (synonym)CRIP
Other aliasCRHP
CRP-1
CRP1
HGNC (Hugo) CRIP1
LocusID (NCBI) 1396
Atlas_Id 52766
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 105486920 and ends at 105488787 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRIP1   2360
Cards
Entrez_Gene (NCBI)CRIP1  1396  cysteine rich protein 1
AliasesCRHP; CRIP; CRP-1; CRP1
GeneCards (Weizmann)CRIP1
Ensembl hg19 (Hinxton)ENSG00000213145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213145 [Gene_View]  ENSG00000213145 [Sequence]  chr14:105486920-105488787 [Contig_View]  CRIP1 [Vega]
ICGC DataPortalENSG00000213145
TCGA cBioPortalCRIP1
AceView (NCBI)CRIP1
Genatlas (Paris)CRIP1
WikiGenes1396
SOURCE (Princeton)CRIP1
Genetics Home Reference (NIH)CRIP1
Genomic and cartography
GoldenPath hg38 (UCSC)CRIP1  -     chr14:105486920-105488787 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRIP1  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblCRIP1 - 14q32.33 [CytoView hg19]  CRIP1 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBICRIP1 [Mapview hg19]  CRIP1 [Mapview hg38]
OMIM123875   
Gene and transcription
Genbank (Entrez)AK092741 AK098290 BC002738 BQ128075 BT007181
RefSeq transcript (Entrez)NM_001311
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRIP1
Cluster EST : UnigeneHs.70327 [ NCBI ]
CGAP (NCI)Hs.70327
Alternative Splicing GalleryENSG00000213145
Gene ExpressionCRIP1 [ NCBI-GEO ]   CRIP1 [ EBI - ARRAY_EXPRESS ]   CRIP1 [ SEEK ]   CRIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1396
GTEX Portal (Tissue expression)CRIP1
Human Protein AtlasENSG00000213145-CRIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50238   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50238  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50238
Splice isoforms : SwissVarP50238
PhosPhoSitePlusP50238
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)CRIP1
DMDM Disease mutations1396
Blocks (Seattle)CRIP1
SuperfamilyP50238
Human Protein Atlas [tissue]ENSG00000213145-CRIP1 [tissue]
Peptide AtlasP50238
HPRD00469
IPIIPI00215611   
Protein Interaction databases
DIP (DOE-UCLA)P50238
IntAct (EBI)P50238
FunCoupENSG00000213145
BioGRIDCRIP1
STRING (EMBL)CRIP1
ZODIACCRIP1
Ontologies - Pathways
QuickGOP50238
Ontology : AmiGOAT DNA binding  cytoplasm  immune response  heart development  zinc ion binding  cell proliferation  DNA binding, bending  intrinsic apoptotic signaling pathway in response to DNA damage  response to organic substance  response to zinc ion  regulation of gene expression  peptide binding  prostate gland stromal morphogenesis  cellular response to antibiotic  cellular response to UV-B  
Ontology : EGO-EBIAT DNA binding  cytoplasm  immune response  heart development  zinc ion binding  cell proliferation  DNA binding, bending  intrinsic apoptotic signaling pathway in response to DNA damage  response to organic substance  response to zinc ion  regulation of gene expression  peptide binding  prostate gland stromal morphogenesis  cellular response to antibiotic  cellular response to UV-B  
NDEx NetworkCRIP1
Atlas of Cancer Signalling NetworkCRIP1
Wikipedia pathwaysCRIP1
Orthology - Evolution
OrthoDB1396
GeneTree (enSembl)ENSG00000213145
Phylogenetic Trees/Animal Genes : TreeFamCRIP1
HOVERGENP50238
HOGENOMP50238
Homologs : HomoloGeneCRIP1
Homology/Alignments : Family Browser (UCSC)CRIP1
Gene fusions - Rearrangements
Fusion : QuiverCRIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRIP1
dbVarCRIP1
ClinVarCRIP1
1000_GenomesCRIP1 
Exome Variant ServerCRIP1
ExAC (Exome Aggregation Consortium)ENSG00000213145
GNOMAD BrowserENSG00000213145
Varsome BrowserCRIP1
Genetic variants : HAPMAP1396
Genomic Variants (DGV)CRIP1 [DGVbeta]
DECIPHERCRIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRIP1 
Mutations
ICGC Data PortalCRIP1 
TCGA Data PortalCRIP1 
Broad Tumor PortalCRIP1
OASIS PortalCRIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRIP1
DgiDB (Drug Gene Interaction Database)CRIP1
DoCM (Curated mutations)CRIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRIP1 (select a term)
intoGenCRIP1
Cancer3DCRIP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123875   
Orphanet
DisGeNETCRIP1
MedgenCRIP1
Genetic Testing Registry CRIP1
NextProtP50238 [Medical]
TSGene1396
GENETestsCRIP1
Target ValidationCRIP1
Huge Navigator CRIP1 [HugePedia]
snp3D : Map Gene to Disease1396
BioCentury BCIQCRIP1
ClinGenCRIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1396
Chemical/Pharm GKB GenePA26878
Clinical trialCRIP1
Miscellaneous
canSAR (ICR)CRIP1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRIP1
EVEXCRIP1
GoPubMedCRIP1
iHOPCRIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:00:14 CET 2018

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