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CRIP3 (cysteine rich protein 3)

Identity

Alias_symbol (synonym)TLP-A
bA480N24.2
TLP
Other alias
HGNC (Hugo) CRIP3
LocusID (NCBI) 401262
Atlas_Id 62086
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43305473 and ends at 43308792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRIP3 (6p21.1) / CRIP3 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRIP3   17751
Cards
Entrez_Gene (NCBI)CRIP3  401262  cysteine rich protein 3
AliasesTLP; TLP-A; bA480N24.2
GeneCards (Weizmann)CRIP3
Ensembl hg19 (Hinxton)ENSG00000146215 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146215 [Gene_View]  ENSG00000146215 [Sequence]  chr6:43305473-43308792 [Contig_View]  CRIP3 [Vega]
ICGC DataPortalENSG00000146215
TCGA cBioPortalCRIP3
AceView (NCBI)CRIP3
Genatlas (Paris)CRIP3
WikiGenes401262
SOURCE (Princeton)CRIP3
Genetics Home Reference (NIH)CRIP3
Genomic and cartography
GoldenPath hg38 (UCSC)CRIP3  -     chr6:43305473-43308792 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRIP3  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblCRIP3 - 6p21.1 [CytoView hg19]  CRIP3 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBICRIP3 [Mapview hg19]  CRIP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI042209 AY555741 AY555742 AY555743 AY555744
RefSeq transcript (Entrez)NM_206922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRIP3
Cluster EST : UnigeneHs.653165 [ NCBI ]
CGAP (NCI)Hs.653165
Alternative Splicing GalleryENSG00000146215
Gene ExpressionCRIP3 [ NCBI-GEO ]   CRIP3 [ EBI - ARRAY_EXPRESS ]   CRIP3 [ SEEK ]   CRIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)CRIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401262
GTEX Portal (Tissue expression)CRIP3
Human Protein AtlasENSG00000146215-CRIP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Q6R5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Q6R5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Q6R5
Splice isoforms : SwissVarQ6Q6R5
PhosPhoSitePlusQ6Q6R5
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)CRIP3
DMDM Disease mutations401262
Blocks (Seattle)CRIP3
SuperfamilyQ6Q6R5
Human Protein Atlas [tissue]ENSG00000146215-CRIP3 [tissue]
Peptide AtlasQ6Q6R5
HPRD16755
IPIIPI00645306   IPI00738893   IPI00410146   IPI00735865   IPI00514160   IPI00853089   
Protein Interaction databases
DIP (DOE-UCLA)Q6Q6R5
IntAct (EBI)Q6Q6R5
FunCoupENSG00000146215
BioGRIDCRIP3
STRING (EMBL)CRIP3
ZODIACCRIP3
Ontologies - Pathways
QuickGOQ6Q6R5
Ontology : AmiGOcytoplasm  zinc ion binding  
Ontology : EGO-EBIcytoplasm  zinc ion binding  
NDEx NetworkCRIP3
Atlas of Cancer Signalling NetworkCRIP3
Wikipedia pathwaysCRIP3
Orthology - Evolution
OrthoDB401262
GeneTree (enSembl)ENSG00000146215
Phylogenetic Trees/Animal Genes : TreeFamCRIP3
HOVERGENQ6Q6R5
HOGENOMQ6Q6R5
Homologs : HomoloGeneCRIP3
Homology/Alignments : Family Browser (UCSC)CRIP3
Gene fusions - Rearrangements
Fusion : QuiverCRIP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRIP3
dbVarCRIP3
ClinVarCRIP3
1000_GenomesCRIP3 
Exome Variant ServerCRIP3
ExAC (Exome Aggregation Consortium)ENSG00000146215
GNOMAD BrowserENSG00000146215
Varsome BrowserCRIP3
Genetic variants : HAPMAP401262
Genomic Variants (DGV)CRIP3 [DGVbeta]
DECIPHERCRIP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRIP3 
Mutations
ICGC Data PortalCRIP3 
TCGA Data PortalCRIP3 
Broad Tumor PortalCRIP3
OASIS PortalCRIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRIP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRIP3
DgiDB (Drug Gene Interaction Database)CRIP3
DoCM (Curated mutations)CRIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRIP3 (select a term)
intoGenCRIP3
Cancer3DCRIP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCRIP3
MedgenCRIP3
Genetic Testing Registry CRIP3
NextProtQ6Q6R5 [Medical]
TSGene401262
GENETestsCRIP3
Target ValidationCRIP3
Huge Navigator CRIP3 [HugePedia]
snp3D : Map Gene to Disease401262
BioCentury BCIQCRIP3
ClinGenCRIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401262
Chemical/Pharm GKB GenePA134929489
Clinical trialCRIP3
Miscellaneous
canSAR (ICR)CRIP3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRIP3
EVEXCRIP3
GoPubMedCRIP3
iHOPCRIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:41:26 CEST 2018

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