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CRIPT (CXXC repeat containing interactor of PDZ3 domain)

Identity

Alias_namescysteine-rich PDZ-binding protein
Alias_symbol (synonym)HSPC139
Other aliasSSMDF
HGNC (Hugo) CRIPT
LocusID (NCBI) 9419
Atlas_Id 62088
Location 2p21  [Link to chromosome band 2p21]
Location_base_pair Starts at 46617172 and ends at 46630176 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRIPT (2p21) / BIRC6 (2p22.3)CRIPT (2p21) / ZFP36L1 (14q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRIPT   14312
Cards
Entrez_Gene (NCBI)CRIPT  9419  CXXC repeat containing interactor of PDZ3 domain
AliasesHSPC139; SSMDF
GeneCards (Weizmann)CRIPT
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:46617172-46630176 [Contig_View]  CRIPT [Vega]
TCGA cBioPortalCRIPT
AceView (NCBI)CRIPT
Genatlas (Paris)CRIPT
WikiGenes9419
SOURCE (Princeton)CRIPT
Genetics Home Reference (NIH)CRIPT
Genomic and cartography
GoldenPath hg38 (UCSC)CRIPT  -     chr2:46617172-46630176 +  2p21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRIPT  -     2p21   [Description]    (hg19-Feb_2009)
EnsemblCRIPT - 2p21 [CytoView hg19]  CRIPT - 2p21 [CytoView hg38]
Mapping of homologs : NCBICRIPT [Mapview hg19]  CRIPT [Mapview hg38]
OMIM604594   615789   
Gene and transcription
Genbank (Entrez)AF161488 AK023264 AK291298 BC006979 BC006980
RefSeq transcript (Entrez)NM_014171
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRIPT
Cluster EST : UnigeneHs.634293 [ NCBI ]
CGAP (NCI)Hs.634293
Gene ExpressionCRIPT [ NCBI-GEO ]   CRIPT [ EBI - ARRAY_EXPRESS ]   CRIPT [ SEEK ]   CRIPT [ MEM ]
Gene Expression Viewer (FireBrowse)CRIPT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9419
GTEX Portal (Tissue expression)CRIPT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P021   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P021  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P021
Splice isoforms : SwissVarQ9P021
PhosPhoSitePlusQ9P021
Domains : Interpro (EBI)PDZ-binding_CRIPT   
Domain families : Pfam (Sanger)Cript (PF10235)   
Domain families : Pfam (NCBI)pfam10235   
Conserved Domain (NCBI)CRIPT
DMDM Disease mutations9419
Blocks (Seattle)CRIPT
SuperfamilyQ9P021
Peptide AtlasQ9P021
HPRD05208
IPIIPI00023080   
Protein Interaction databases
DIP (DOE-UCLA)Q9P021
IntAct (EBI)Q9P021
BioGRIDCRIPT
STRING (EMBL)CRIPT
ZODIACCRIPT
Ontologies - Pathways
QuickGOQ9P021
Ontology : AmiGOprotein binding  nucleus  nucleolus  cytoplasm  microtubule binding  postsynaptic density  cell junction  PDZ domain binding  dendrite  cytoplasmic microtubule organization  protein complex binding  protein localization to microtubule  neuronal cell body  dendritic spine  dendritic shaft  establishment of protein localization  scaffold protein binding  regulation of postsynaptic density protein 95 clustering  
Ontology : EGO-EBIprotein binding  nucleus  nucleolus  cytoplasm  microtubule binding  postsynaptic density  cell junction  PDZ domain binding  dendrite  cytoplasmic microtubule organization  protein complex binding  protein localization to microtubule  neuronal cell body  dendritic spine  dendritic shaft  establishment of protein localization  scaffold protein binding  regulation of postsynaptic density protein 95 clustering  
NDEx NetworkCRIPT
Atlas of Cancer Signalling NetworkCRIPT
Wikipedia pathwaysCRIPT
Orthology - Evolution
OrthoDB9419
Phylogenetic Trees/Animal Genes : TreeFamCRIPT
HOVERGENQ9P021
HOGENOMQ9P021
Homologs : HomoloGeneCRIPT
Homology/Alignments : Family Browser (UCSC)CRIPT
Gene fusions - Rearrangements
Fusion: Tumor Portal CRIPT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRIPT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRIPT
dbVarCRIPT
ClinVarCRIPT
1000_GenomesCRIPT 
Exome Variant ServerCRIPT
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP9419
Genomic Variants (DGV)CRIPT [DGVbeta]
DECIPHERCRIPT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRIPT 
Mutations
ICGC Data PortalCRIPT 
TCGA Data PortalCRIPT 
Broad Tumor PortalCRIPT
OASIS PortalCRIPT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRIPT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRIPT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRIPT
DgiDB (Drug Gene Interaction Database)CRIPT
DoCM (Curated mutations)CRIPT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRIPT (select a term)
intoGenCRIPT
Cancer3DCRIPT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604594    615789   
Orphanet
MedgenCRIPT
Genetic Testing Registry CRIPT
NextProtQ9P021 [Medical]
TSGene9419
GENETestsCRIPT
Target ValidationCRIPT
Huge Navigator CRIPT [HugePedia]
snp3D : Map Gene to Disease9419
BioCentury BCIQCRIPT
ClinGenCRIPT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9419
Chemical/Pharm GKB GenePA145149101
Clinical trialCRIPT
Miscellaneous
canSAR (ICR)CRIPT (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRIPT
EVEXCRIPT
GoPubMedCRIPT
iHOPCRIPT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:23 CET 2017

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