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CRISP2 (cysteine rich secretory protein 2)

Identity

Alias (NCBI)CRISP-2
CT36
GAPDL5
TPX1
TSP1
HGNC (Hugo) CRISP2
HGNC Alias symbCRISP-2
CT36
HGNC Alias namecancer/testis antigen 36
HGNC Previous nameGAPDL5
 TPX1
HGNC Previous nametestis specific protein 1 (probe H4-1 p3-1)
LocusID (NCBI) 7180
Atlas_Id 43097
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 49692359 and ends at 49713543 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CRISP2   12024
Cards
Entrez_Gene (NCBI)CRISP2    cysteine rich secretory protein 2
AliasesCRISP-2; CT36; GAPDL5; TPX1; 
TSP1
GeneCards (Weizmann)CRISP2
Ensembl hg19 (Hinxton)ENSG00000124490 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124490 [Gene_View]  ENSG00000124490 [Sequence]  chr6:49692359-49713543 [Contig_View]  CRISP2 [Vega]
ICGC DataPortalENSG00000124490
TCGA cBioPortalCRISP2
AceView (NCBI)CRISP2
Genatlas (Paris)CRISP2
SOURCE (Princeton)CRISP2
Genetics Home Reference (NIH)CRISP2
Genomic and cartography
GoldenPath hg38 (UCSC)CRISP2  -     chr6:49692359-49713543 -  6p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRISP2  -     6p12.3   [Description]    (hg19-Feb_2009)
GoldenPathCRISP2 - 6p12.3 [CytoView hg19]  CRISP2 - 6p12.3 [CytoView hg38]
ImmunoBaseENSG00000124490
genome Data Viewer NCBICRISP2 [Mapview hg19]  
OMIM187430   
Gene and transcription
Genbank (Entrez)AK128009 AK223337 AK292385 AY289796 AY292862
RefSeq transcript (Entrez)NM_001142407 NM_001142408 NM_001142417 NM_001142435 NM_001261822 NM_003296
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRISP2
Alternative Splicing GalleryENSG00000124490
Gene ExpressionCRISP2 [ NCBI-GEO ]   CRISP2 [ EBI - ARRAY_EXPRESS ]   CRISP2 [ SEEK ]   CRISP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CRISP2 [ Firebrowse - Broad ]
GenevisibleExpression of CRISP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7180
GTEX Portal (Tissue expression)CRISP2
Human Protein AtlasENSG00000124490-CRISP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16562   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16562  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16562
Splice isoforms : SwissVarP16562
PhosPhoSitePlusP16562
Domaine pattern : Prosite (Expaxy)CRISP_1 (PS01009)    CRISP_2 (PS01010)    SHKT (PS51670)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1_CS    CAP_domain    CAP_sf    Crisp-like_dom    CRISP-related    Cysteine_rich_secretory    SCP_CRISP    ShKT_dom   
Domain families : Pfam (Sanger)CAP (PF00188)    Crisp (PF08562)   
Domain families : Pfam (NCBI)pfam00188    pfam08562   
Domain families : Smart (EMBL)SCP (SM00198)  
Conserved Domain (NCBI)CRISP2
Blocks (Seattle)CRISP2
PDB (RSDB)2CQ7   
PDB Europe2CQ7   
PDB (PDBSum)2CQ7   
PDB (IMB)2CQ7   
Structural Biology KnowledgeBase2CQ7   
SCOP (Structural Classification of Proteins)2CQ7   
CATH (Classification of proteins structures)2CQ7   
SuperfamilyP16562
Human Protein Atlas [tissue]ENSG00000124490-CRISP2 [tissue]
Peptide AtlasP16562
HPRD01758
IPIIPI00029218   IPI00385520   
Protein Interaction databases
DIP (DOE-UCLA)P16562
IntAct (EBI)P16562
BioGRIDCRISP2
STRING (EMBL)CRISP2
ZODIACCRISP2
Ontologies - Pathways
QuickGOP16562
Ontology : AmiGOextracellular space  cell-cell adhesion  
Ontology : EGO-EBIextracellular space  cell-cell adhesion  
NDEx NetworkCRISP2
Atlas of Cancer Signalling NetworkCRISP2
Wikipedia pathwaysCRISP2
Orthology - Evolution
OrthoDB7180
GeneTree (enSembl)ENSG00000124490
Phylogenetic Trees/Animal Genes : TreeFamCRISP2
HOGENOMP16562
Homologs : HomoloGeneCRISP2
Homology/Alignments : Family Browser (UCSC)CRISP2
Gene fusions - Rearrangements
Fusion : QuiverCRISP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRISP2 [hg38]
dbVarCRISP2
ClinVarCRISP2
MonarchCRISP2
1000_GenomesCRISP2 
Exome Variant ServerCRISP2
GNOMAD BrowserENSG00000124490
Varsome BrowserCRISP2
Genomic Variants (DGV)CRISP2 [DGVbeta]
DECIPHERCRISP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRISP2 
Mutations
ICGC Data PortalCRISP2 
TCGA Data PortalCRISP2 
Broad Tumor PortalCRISP2
OASIS PortalCRISP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRISP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCRISP2
Mutations and Diseases : HGMDCRISP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRISP2
DgiDB (Drug Gene Interaction Database)CRISP2
DoCM (Curated mutations)CRISP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRISP2 (select a term)
intoGenCRISP2
Cancer3DCRISP2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM187430   
Orphanet
DisGeNETCRISP2
MedgenCRISP2
Genetic Testing Registry CRISP2
NextProtP16562 [Medical]
GENETestsCRISP2
Target ValidationCRISP2
Huge Navigator CRISP2 [HugePedia]
ClinGenCRISP2
Clinical trials, drugs, therapy
MyCancerGenomeCRISP2
Protein Interactions : CTD
Pharm GKB GenePA36703
Clinical trialCRISP2
Miscellaneous
canSAR (ICR)CRISP2 (select the gene name)
HarmonizomeCRISP2
DataMed IndexCRISP2
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCRISP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 20:44:36 CET 2020

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