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CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1)

Identity

Alias_namesLCRISP1
LCCL domain containing cysteine-rich secretory protein 1
Alias_symbol (synonym)Cocoacrisp
DKFZp762F133
Other aliasCRISP-10
CRISP10
HGNC (Hugo) CRISPLD1
LocusID (NCBI) 83690
Atlas_Id 62090
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 75000154 and ends at 75034558 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRISPLD1   18206
Cards
Entrez_Gene (NCBI)CRISPLD1  83690  cysteine rich secretory protein LCCL domain containing 1
AliasesCRISP-10; CRISP10; LCRISP1
GeneCards (Weizmann)CRISPLD1
Ensembl hg19 (Hinxton)ENSG00000121005 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121005 [Gene_View]  chr8:75000154-75034558 [Contig_View]  CRISPLD1 [Vega]
ICGC DataPortalENSG00000121005
TCGA cBioPortalCRISPLD1
AceView (NCBI)CRISPLD1
Genatlas (Paris)CRISPLD1
WikiGenes83690
SOURCE (Princeton)CRISPLD1
Genetics Home Reference (NIH)CRISPLD1
Genomic and cartography
GoldenPath hg38 (UCSC)CRISPLD1  -     chr8:75000154-75034558 +  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRISPLD1  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblCRISPLD1 - 8q21.13 [CytoView hg19]  CRISPLD1 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBICRISPLD1 [Mapview hg19]  CRISPLD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF142573 AF329197 AK304034 AK304350 AK314048
RefSeq transcript (Entrez)NM_001286777 NM_001286778 NM_031461
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRISPLD1
Cluster EST : UnigeneHs.436542 [ NCBI ]
CGAP (NCI)Hs.436542
Alternative Splicing GalleryENSG00000121005
Gene ExpressionCRISPLD1 [ NCBI-GEO ]   CRISPLD1 [ EBI - ARRAY_EXPRESS ]   CRISPLD1 [ SEEK ]   CRISPLD1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRISPLD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83690
GTEX Portal (Tissue expression)CRISPLD1
Human Protein AtlasENSG00000121005-CRISPLD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H336   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H336  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H336
Splice isoforms : SwissVarQ9H336
PhosPhoSitePlusQ9H336
Domaine pattern : Prosite (Expaxy)CRISP_2 (PS01010)    LCCL (PS50820)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1    Allrgn_V5/Tpx1_CS    CAP_domain    LCCL   
Domain families : Pfam (Sanger)CAP (PF00188)    LCCL (PF03815)   
Domain families : Pfam (NCBI)pfam00188    pfam03815   
Domain families : Smart (EMBL)LCCL (SM00603)  SCP (SM00198)  
Conserved Domain (NCBI)CRISPLD1
DMDM Disease mutations83690
Blocks (Seattle)CRISPLD1
SuperfamilyQ9H336
Human Protein Atlas [tissue]ENSG00000121005-CRISPLD1 [tissue]
Peptide AtlasQ9H336
HPRD16756
IPIIPI00027806   IPI00979609   IPI00980295   IPI00922245   
Protein Interaction databases
DIP (DOE-UCLA)Q9H336
IntAct (EBI)Q9H336
FunCoupENSG00000121005
BioGRIDCRISPLD1
STRING (EMBL)CRISPLD1
ZODIACCRISPLD1
Ontologies - Pathways
QuickGOQ9H336
Ontology : AmiGOmolecular_function  face morphogenesis  extracellular exosome  
Ontology : EGO-EBImolecular_function  face morphogenesis  extracellular exosome  
NDEx NetworkCRISPLD1
Atlas of Cancer Signalling NetworkCRISPLD1
Wikipedia pathwaysCRISPLD1
Orthology - Evolution
OrthoDB83690
GeneTree (enSembl)ENSG00000121005
Phylogenetic Trees/Animal Genes : TreeFamCRISPLD1
HOVERGENQ9H336
HOGENOMQ9H336
Homologs : HomoloGeneCRISPLD1
Homology/Alignments : Family Browser (UCSC)CRISPLD1
Gene fusions - Rearrangements
Tumor Fusion PortalCRISPLD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRISPLD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRISPLD1
dbVarCRISPLD1
ClinVarCRISPLD1
1000_GenomesCRISPLD1 
Exome Variant ServerCRISPLD1
ExAC (Exome Aggregation Consortium)ENSG00000121005
GNOMAD BrowserENSG00000121005
Genetic variants : HAPMAP83690
Genomic Variants (DGV)CRISPLD1 [DGVbeta]
DECIPHERCRISPLD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRISPLD1 
Mutations
ICGC Data PortalCRISPLD1 
TCGA Data PortalCRISPLD1 
Broad Tumor PortalCRISPLD1
OASIS PortalCRISPLD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRISPLD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRISPLD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRISPLD1
DgiDB (Drug Gene Interaction Database)CRISPLD1
DoCM (Curated mutations)CRISPLD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRISPLD1 (select a term)
intoGenCRISPLD1
Cancer3DCRISPLD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCRISPLD1
MedgenCRISPLD1
Genetic Testing Registry CRISPLD1
NextProtQ9H336 [Medical]
TSGene83690
GENETestsCRISPLD1
Target ValidationCRISPLD1
Huge Navigator CRISPLD1 [HugePedia]
snp3D : Map Gene to Disease83690
BioCentury BCIQCRISPLD1
ClinGenCRISPLD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83690
Chemical/Pharm GKB GenePA142672076
Clinical trialCRISPLD1
Miscellaneous
canSAR (ICR)CRISPLD1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRISPLD1
EVEXCRISPLD1
GoPubMedCRISPLD1
iHOPCRISPLD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:59 CET 2017

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