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CRISPLD2 (cysteine rich secretory protein LCCL domain containing 2)

Identity

Alias_namesLCRISP2
LCCL domain containing cysteine-rich secretory protein 2
Alias_symbol (synonym)DKFZP434B044
Other aliasCRISP11
LGL1
HGNC (Hugo) CRISPLD2
LocusID (NCBI) 83716
Atlas_Id 62091
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 84819981 and ends at 84909510 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARNT (1q21.3) / CRISPLD2 (16q24.1)CRISPLD2 (16q24.1) / MPZL2 (11q23.3)UBL3 (13q12.3) / CRISPLD2 (16q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRISPLD2   25248
Cards
Entrez_Gene (NCBI)CRISPLD2  83716  cysteine rich secretory protein LCCL domain containing 2
AliasesCRISP11; LCRISP2; LGL1
GeneCards (Weizmann)CRISPLD2
Ensembl hg19 (Hinxton)ENSG00000103196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103196 [Gene_View]  chr16:84819981-84909510 [Contig_View]  CRISPLD2 [Vega]
ICGC DataPortalENSG00000103196
TCGA cBioPortalCRISPLD2
AceView (NCBI)CRISPLD2
Genatlas (Paris)CRISPLD2
WikiGenes83716
SOURCE (Princeton)CRISPLD2
Genetics Home Reference (NIH)CRISPLD2
Genomic and cartography
GoldenPath hg38 (UCSC)CRISPLD2  -     chr16:84819981-84909510 +  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRISPLD2  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblCRISPLD2 - 16q24.1 [CytoView hg19]  CRISPLD2 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBICRISPLD2 [Mapview hg19]  CRISPLD2 [Mapview hg38]
OMIM612434   
Gene and transcription
Genbank (Entrez)AK027395 AK056839 AK303887 AK308396 AL136861
RefSeq transcript (Entrez)NM_031476
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRISPLD2
Cluster EST : UnigeneHs.617091 [ NCBI ]
CGAP (NCI)Hs.617091
Alternative Splicing GalleryENSG00000103196
Gene ExpressionCRISPLD2 [ NCBI-GEO ]   CRISPLD2 [ EBI - ARRAY_EXPRESS ]   CRISPLD2 [ SEEK ]   CRISPLD2 [ MEM ]
Gene Expression Viewer (FireBrowse)CRISPLD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83716
GTEX Portal (Tissue expression)CRISPLD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0B8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0B8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0B8
Splice isoforms : SwissVarQ9H0B8
PhosPhoSitePlusQ9H0B8
Domaine pattern : Prosite (Expaxy)CRISP_2 (PS01010)    LCCL (PS50820)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1    Allrgn_V5/Tpx1_CS    CAP_domain    LCCL   
Domain families : Pfam (Sanger)CAP (PF00188)    LCCL (PF03815)   
Domain families : Pfam (NCBI)pfam00188    pfam03815   
Domain families : Smart (EMBL)LCCL (SM00603)  SCP (SM00198)  
Conserved Domain (NCBI)CRISPLD2
DMDM Disease mutations83716
Blocks (Seattle)CRISPLD2
SuperfamilyQ9H0B8
Human Protein AtlasENSG00000103196
Peptide AtlasQ9H0B8
HPRD13186
IPIIPI00027821   IPI00785047   IPI00785080   IPI00785039   IPI00785102   IPI00910778   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0B8
IntAct (EBI)Q9H0B8
FunCoupENSG00000103196
BioGRIDCRISPLD2
STRING (EMBL)CRISPLD2
ZODIACCRISPLD2
Ontologies - Pathways
QuickGOQ9H0B8
Ontology : AmiGOextracellular region  proteinaceous extracellular matrix  heparin binding  transport vesicle  extracellular matrix organization  lung development  secretory granule lumen  neutrophil degranulation  face morphogenesis  extracellular exosome  ficolin-1-rich granule lumen  
Ontology : EGO-EBIextracellular region  proteinaceous extracellular matrix  heparin binding  transport vesicle  extracellular matrix organization  lung development  secretory granule lumen  neutrophil degranulation  face morphogenesis  extracellular exosome  ficolin-1-rich granule lumen  
NDEx NetworkCRISPLD2
Atlas of Cancer Signalling NetworkCRISPLD2
Wikipedia pathwaysCRISPLD2
Orthology - Evolution
OrthoDB83716
GeneTree (enSembl)ENSG00000103196
Phylogenetic Trees/Animal Genes : TreeFamCRISPLD2
HOVERGENQ9H0B8
HOGENOMQ9H0B8
Homologs : HomoloGeneCRISPLD2
Homology/Alignments : Family Browser (UCSC)CRISPLD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRISPLD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRISPLD2
dbVarCRISPLD2
ClinVarCRISPLD2
1000_GenomesCRISPLD2 
Exome Variant ServerCRISPLD2
ExAC (Exome Aggregation Consortium)CRISPLD2 (select the gene name)
Genetic variants : HAPMAP83716
Genomic Variants (DGV)CRISPLD2 [DGVbeta]
DECIPHERCRISPLD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRISPLD2 
Mutations
ICGC Data PortalCRISPLD2 
TCGA Data PortalCRISPLD2 
Broad Tumor PortalCRISPLD2
OASIS PortalCRISPLD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRISPLD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRISPLD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRISPLD2
DgiDB (Drug Gene Interaction Database)CRISPLD2
DoCM (Curated mutations)CRISPLD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRISPLD2 (select a term)
intoGenCRISPLD2
Cancer3DCRISPLD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612434   
Orphanet
MedgenCRISPLD2
Genetic Testing Registry CRISPLD2
NextProtQ9H0B8 [Medical]
TSGene83716
GENETestsCRISPLD2
Target ValidationCRISPLD2
Huge Navigator CRISPLD2 [HugePedia]
snp3D : Map Gene to Disease83716
BioCentury BCIQCRISPLD2
ClinGenCRISPLD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83716
Chemical/Pharm GKB GenePA142672077
Clinical trialCRISPLD2
Miscellaneous
canSAR (ICR)CRISPLD2 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRISPLD2
EVEXCRISPLD2
GoPubMedCRISPLD2
iHOPCRISPLD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:12:49 CEST 2017

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