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CRLF3 (cytokine receptor like factor 3)

Identity

Alias_namescytokine receptor-like factor 3
Alias_symbol (synonym)CREME9
CYTOR4
Other aliasCREME-9
CRLM9
FRWS
p48.2
HGNC (Hugo) CRLF3
LocusID (NCBI) 51379
Atlas_Id 62093
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30782684 and ends at 30824760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C11orf96 (11p11.2) / CRLF3 (17q11.2)CRLF3 (17q11.2) / ARHGEF6 (Xq26.3)CRLF3 (17q11.2) / CRLF3 (17q11.2)
FAM13A (4q22.1) / CRLF3 (17q11.2)NOCT (4q31.1) / CRLF3 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRLF3   17177
Cards
Entrez_Gene (NCBI)CRLF3  51379  cytokine receptor like factor 3
AliasesCREME-9; CREME9; CRLM9; CYTOR4; 
FRWS; p48.2
GeneCards (Weizmann)CRLF3
Ensembl hg19 (Hinxton)ENSG00000176390 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176390 [Gene_View]  chr17:30782684-30824760 [Contig_View]  CRLF3 [Vega]
ICGC DataPortalENSG00000176390
TCGA cBioPortalCRLF3
AceView (NCBI)CRLF3
Genatlas (Paris)CRLF3
WikiGenes51379
SOURCE (Princeton)CRLF3
Genetics Home Reference (NIH)CRLF3
Genomic and cartography
GoldenPath hg38 (UCSC)CRLF3  -     chr17:30782684-30824760 -  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRLF3  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblCRLF3 - 17q11.2 [CytoView hg19]  CRLF3 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBICRLF3 [Mapview hg19]  CRLF3 [Mapview hg38]
OMIM614853   
Gene and transcription
Genbank (Entrez)AA993312 AF046059 AF120151 AK296238 AK313315
RefSeq transcript (Entrez)NM_015986
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRLF3
Cluster EST : UnigeneHs.649372 [ NCBI ]
CGAP (NCI)Hs.649372
Alternative Splicing GalleryENSG00000176390
Gene ExpressionCRLF3 [ NCBI-GEO ]   CRLF3 [ EBI - ARRAY_EXPRESS ]   CRLF3 [ SEEK ]   CRLF3 [ MEM ]
Gene Expression Viewer (FireBrowse)CRLF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51379
GTEX Portal (Tissue expression)CRLF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUI8
Splice isoforms : SwissVarQ8IUI8
PhosPhoSitePlusQ8IUI8
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CRLF3
DMDM Disease mutations51379
Blocks (Seattle)CRLF3
SuperfamilyQ8IUI8
Human Protein AtlasENSG00000176390
Peptide AtlasQ8IUI8
HPRD16757
IPIIPI00295387   IPI01010084   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUI8
IntAct (EBI)Q8IUI8
FunCoupENSG00000176390
BioGRIDCRLF3
STRING (EMBL)CRLF3
ZODIACCRLF3
Ontologies - Pathways
QuickGOQ8IUI8
Ontology : AmiGOG1/S transition of mitotic cell cycle  protein binding  cytoplasm  cytosol  plasma membrane  negative regulation of cell growth  identical protein binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  positive regulation of JAK-STAT cascade  positive regulation of cell cycle arrest  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  protein binding  cytoplasm  cytosol  plasma membrane  negative regulation of cell growth  identical protein binding  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  positive regulation of JAK-STAT cascade  positive regulation of cell cycle arrest  
NDEx NetworkCRLF3
Atlas of Cancer Signalling NetworkCRLF3
Wikipedia pathwaysCRLF3
Orthology - Evolution
OrthoDB51379
GeneTree (enSembl)ENSG00000176390
Phylogenetic Trees/Animal Genes : TreeFamCRLF3
HOVERGENQ8IUI8
HOGENOMQ8IUI8
Homologs : HomoloGeneCRLF3
Homology/Alignments : Family Browser (UCSC)CRLF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRLF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRLF3
dbVarCRLF3
ClinVarCRLF3
1000_GenomesCRLF3 
Exome Variant ServerCRLF3
ExAC (Exome Aggregation Consortium)CRLF3 (select the gene name)
Genetic variants : HAPMAP51379
Genomic Variants (DGV)CRLF3 [DGVbeta]
DECIPHERCRLF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRLF3 
Mutations
ICGC Data PortalCRLF3 
TCGA Data PortalCRLF3 
Broad Tumor PortalCRLF3
OASIS PortalCRLF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRLF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRLF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRLF3
DgiDB (Drug Gene Interaction Database)CRLF3
DoCM (Curated mutations)CRLF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRLF3 (select a term)
intoGenCRLF3
Cancer3DCRLF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614853   
Orphanet
MedgenCRLF3
Genetic Testing Registry CRLF3
NextProtQ8IUI8 [Medical]
TSGene51379
GENETestsCRLF3
Target ValidationCRLF3
Huge Navigator CRLF3 [HugePedia]
snp3D : Map Gene to Disease51379
BioCentury BCIQCRLF3
ClinGenCRLF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51379
Chemical/Pharm GKB GenePA26884
Clinical trialCRLF3
Miscellaneous
canSAR (ICR)CRLF3 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRLF3
EVEXCRLF3
GoPubMedCRLF3
iHOPCRLF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:12:49 CEST 2017

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