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CRNDE (colorectal neoplasia differentially expressed (non-protein coding))

Identity

Alias_symbol (synonym)LOC643911
LINC00180
CRNDEP
Other aliasNCRNA00180
PNAS-108
lincIRX5
HGNC (Hugo) CRNDE
LocusID (NCBI) 643911
Atlas_Id 53638
Location 16q12.2  [Link to chromosome band 16q12]
Location_base_pair Starts at 54952777 and ends at 54962690 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRNDE   37078
Cards
Entrez_Gene (NCBI)CRNDE  643911  colorectal neoplasia differentially expressed (non-protein coding)
AliasesCRNDEP; LINC00180; NCRNA00180; PNAS-108; 
lincIRX5
GeneCards (Weizmann)CRNDE
Ensembl hg19 (Hinxton) [Gene_View]  chr16:54952777-54962690 [Contig_View]  CRNDE [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:54952777-54962690 [Contig_View]  CRNDE [Vega]
TCGA cBioPortalCRNDE
AceView (NCBI)CRNDE
Genatlas (Paris)CRNDE
WikiGenes643911
SOURCE (Princeton)CRNDE
Genetics Home Reference (NIH)CRNDE
Genomic and cartography
GoldenPath hg19 (UCSC)CRNDE  -     chr16:54952777-54962690 -  16q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRNDE  -     16q12.2   [Description]    (hg38-Dec_2013)
EnsemblCRNDE - 16q12.2 [CytoView hg19]  CRNDE - 16q12.2 [CytoView hg38]
Mapping of homologs : NCBICRNDE [Mapview hg19]  CRNDE [Mapview hg38]
OMIM615624   
Gene and transcription
Genbank (Entrez)AF275804 BF692451 BM974647 BU180741 CV575277
RefSeq transcript (Entrez)NM_001308963
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)CRNDE
Cluster EST : UnigeneHs.237396 [ NCBI ]
CGAP (NCI)Hs.237396
Gene ExpressionCRNDE [ NCBI-GEO ]   CRNDE [ EBI - ARRAY_EXPRESS ]   CRNDE [ SEEK ]   CRNDE [ MEM ]
Gene Expression Viewer (FireBrowse)CRNDE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643911
GTEX Portal (Tissue expression)CRNDE
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CRNDE
DMDM Disease mutations643911
Blocks (Seattle)CRNDE
Protein Interaction databases
BioGRIDCRNDE
STRING (EMBL)CRNDE
ZODIACCRNDE
Ontologies - Pathways
Huge Navigator CRNDE [HugePedia]
snp3D : Map Gene to Disease643911
BioCentury BCIQCRNDE
ClinGenCRNDE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643911
Chemical/Pharm GKB GenePA165449849
Clinical trialCRNDE
Miscellaneous
canSAR (ICR)CRNDE (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRNDE
EVEXCRNDE
GoPubMedCRNDE
iHOPCRNDE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:57:39 CEST 2017

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