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CRNN (cornulin)

Identity

Alias_namesC1orf10
chromosome 1 open reading frame 10
Alias_symbol (synonym)SEP53
Other aliasDRC1
PDRC1
HGNC (Hugo) CRNN
LocusID (NCBI) 49860
Atlas_Id 870
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 152409243 and ends at 152414274 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRNN   1230
Cards
Entrez_Gene (NCBI)CRNN  49860  cornulin
AliasesC1orf10; DRC1; PDRC1; SEP53
GeneCards (Weizmann)CRNN
Ensembl hg19 (Hinxton)ENSG00000143536 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143536 [Gene_View]  chr1:152409243-152414274 [Contig_View]  CRNN [Vega]
ICGC DataPortalENSG00000143536
TCGA cBioPortalCRNN
AceView (NCBI)CRNN
Genatlas (Paris)CRNN
WikiGenes49860
SOURCE (Princeton)CRNN
Genetics Home Reference (NIH)CRNN
Genomic and cartography
GoldenPath hg38 (UCSC)CRNN  -     chr1:152409243-152414274 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRNN  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblCRNN - 1q21.3 [CytoView hg19]  CRNN - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBICRNN [Mapview hg19]  CRNN [Mapview hg38]
OMIM611312   
Gene and transcription
Genbank (Entrez)AF077831 AK291301 AK298640 AK316568 BC030807
RefSeq transcript (Entrez)NM_016190
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRNN
Cluster EST : UnigeneHs.242057 [ NCBI ]
CGAP (NCI)Hs.242057
Alternative Splicing GalleryENSG00000143536
Gene ExpressionCRNN [ NCBI-GEO ]   CRNN [ EBI - ARRAY_EXPRESS ]   CRNN [ SEEK ]   CRNN [ MEM ]
Gene Expression Viewer (FireBrowse)CRNN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)49860
GTEX Portal (Tissue expression)CRNN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBG3
Splice isoforms : SwissVarQ9UBG3
PhosPhoSitePlusQ9UBG3
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)Cornulin    EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    S-100_dom    S100_Ca-bd_sub   
Domain families : Pfam (Sanger)S_100 (PF01023)   
Domain families : Pfam (NCBI)pfam01023   
Domain families : Smart (EMBL)EFh (SM00054)  S_100 (SM01394)  
Conserved Domain (NCBI)CRNN
DMDM Disease mutations49860
Blocks (Seattle)CRNN
SuperfamilyQ9UBG3
Human Protein AtlasENSG00000143536
Peptide AtlasQ9UBG3
HPRD12720
IPIIPI00297056   IPI00908402   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBG3
IntAct (EBI)Q9UBG3
FunCoupENSG00000143536
BioGRIDCRNN
STRING (EMBL)CRNN
ZODIACCRNN
Ontologies - Pathways
QuickGOQ9UBG3
Ontology : AmiGOcalcium ion binding  cytoplasm  response to heat  membrane  single organismal cell-cell adhesion  transition metal ion binding  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  cytoplasm  response to heat  membrane  single organismal cell-cell adhesion  transition metal ion binding  extracellular exosome  
NDEx NetworkCRNN
Atlas of Cancer Signalling NetworkCRNN
Wikipedia pathwaysCRNN
Orthology - Evolution
OrthoDB49860
GeneTree (enSembl)ENSG00000143536
Phylogenetic Trees/Animal Genes : TreeFamCRNN
HOVERGENQ9UBG3
HOGENOMQ9UBG3
Homologs : HomoloGeneCRNN
Homology/Alignments : Family Browser (UCSC)CRNN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRNN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRNN
dbVarCRNN
ClinVarCRNN
1000_GenomesCRNN 
Exome Variant ServerCRNN
ExAC (Exome Aggregation Consortium)CRNN (select the gene name)
Genetic variants : HAPMAP49860
Genomic Variants (DGV)CRNN [DGVbeta]
DECIPHERCRNN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRNN 
Mutations
ICGC Data PortalCRNN 
TCGA Data PortalCRNN 
Broad Tumor PortalCRNN
OASIS PortalCRNN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRNN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRNN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRNN
DgiDB (Drug Gene Interaction Database)CRNN
DoCM (Curated mutations)CRNN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRNN (select a term)
intoGenCRNN
Cancer3DCRNN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611312   
Orphanet
MedgenCRNN
Genetic Testing Registry CRNN
NextProtQ9UBG3 [Medical]
TSGene49860
GENETestsCRNN
Target ValidationCRNN
Huge Navigator CRNN [HugePedia]
snp3D : Map Gene to Disease49860
BioCentury BCIQCRNN
ClinGenCRNN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD49860
Chemical/Pharm GKB GenePA25601
Clinical trialCRNN
Miscellaneous
canSAR (ICR)CRNN (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRNN
EVEXCRNN
GoPubMedCRNN
iHOPCRNN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:29:38 CEST 2017

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