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CROCC2 (ciliary rootlet coiled-coil, rootletin family member 2)

Identity

Other alias-
HGNC (Hugo) CROCC2
LocusID (NCBI) 728763
Atlas_Id 79536
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 240906514 and ends at 240993311 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CROCC2   51677
Cards
Entrez_Gene (NCBI)CROCC2  728763  ciliary rootlet coiled-coil, rootletin family member 2
Aliases
GeneCards (Weizmann)CROCC2
Ensembl hg19 (Hinxton)ENSG00000226321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226321 [Gene_View]  chr2:240906514-240993311 [Contig_View]  CROCC2 [Vega]
ICGC DataPortalENSG00000226321
TCGA cBioPortalCROCC2
AceView (NCBI)CROCC2
Genatlas (Paris)CROCC2
WikiGenes728763
SOURCE (Princeton)CROCC2
Genetics Home Reference (NIH)CROCC2
Genomic and cartography
GoldenPath hg38 (UCSC)CROCC2  -     chr2:240906514-240993311 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CROCC2  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblCROCC2 - 2q37.3 [CytoView hg19]  CROCC2 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBICROCC2 [Mapview hg19]  CROCC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU682871 BX091140 DT932542 DV080150 DV080240
RefSeq transcript (Entrez)NM_001351305
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CROCC2
Cluster EST : UnigeneHs.737820 [ NCBI ]
CGAP (NCI)Hs.737820
Alternative Splicing GalleryENSG00000226321
Gene ExpressionCROCC2 [ NCBI-GEO ]   CROCC2 [ EBI - ARRAY_EXPRESS ]   CROCC2 [ SEEK ]   CROCC2 [ MEM ]
Gene Expression Viewer (FireBrowse)CROCC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728763
GTEX Portal (Tissue expression)CROCC2
Human Protein AtlasENSG00000226321-CROCC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtH7BZ55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH7BZ55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH7BZ55
Splice isoforms : SwissVarH7BZ55
PhosPhoSitePlusH7BZ55
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CROCC2
DMDM Disease mutations728763
Blocks (Seattle)CROCC2
SuperfamilyH7BZ55
Human Protein Atlas [tissue]ENSG00000226321-CROCC2 [tissue]
Peptide AtlasH7BZ55
IPIIPI00894222   IPI00894113   IPI00894001   IPI00893595   IPI00893755   IPI01012602   
Protein Interaction databases
DIP (DOE-UCLA)H7BZ55
IntAct (EBI)H7BZ55
FunCoupENSG00000226321
BioGRIDCROCC2
STRING (EMBL)CROCC2
ZODIACCROCC2
Ontologies - Pathways
QuickGOH7BZ55
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCROCC2
Atlas of Cancer Signalling NetworkCROCC2
Wikipedia pathwaysCROCC2
Orthology - Evolution
OrthoDB728763
GeneTree (enSembl)ENSG00000226321
Phylogenetic Trees/Animal Genes : TreeFamCROCC2
HOVERGENH7BZ55
HOGENOMH7BZ55
Homologs : HomoloGeneCROCC2
Homology/Alignments : Family Browser (UCSC)CROCC2
Gene fusions - Rearrangements
Tumor Fusion PortalCROCC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCROCC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CROCC2
dbVarCROCC2
ClinVarCROCC2
1000_GenomesCROCC2 
Exome Variant ServerCROCC2
ExAC (Exome Aggregation Consortium)ENSG00000226321
GNOMAD BrowserENSG00000226321
Genetic variants : HAPMAP728763
Genomic Variants (DGV)CROCC2 [DGVbeta]
DECIPHERCROCC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCROCC2 
Mutations
ICGC Data PortalCROCC2 
TCGA Data PortalCROCC2 
Broad Tumor PortalCROCC2
OASIS PortalCROCC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCROCC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CROCC2
DgiDB (Drug Gene Interaction Database)CROCC2
DoCM (Curated mutations)CROCC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CROCC2 (select a term)
intoGenCROCC2
Cancer3DCROCC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCROCC2
MedgenCROCC2
Genetic Testing Registry CROCC2
NextProtH7BZ55 [Medical]
TSGene728763
GENETestsCROCC2
Target ValidationCROCC2
Huge Navigator CROCC2 [HugePedia]
snp3D : Map Gene to Disease728763
BioCentury BCIQCROCC2
ClinGenCROCC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728763
Clinical trialCROCC2
Miscellaneous
canSAR (ICR)CROCC2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCROCC2
EVEXCROCC2
GoPubMedCROCC2
iHOPCROCC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:25:04 CET 2017

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