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CROCCP2 (ciliary rootlet coiled-coil, rootletin pseudogene 2)

Identity

Alias_namesCROCCL1
ciliary rootlet coiled-coil, rootletin-like 1
Alias_symbol (synonym)MGC12760
Other alias
HGNC (Hugo) CROCCP2
LocusID (NCBI) 84809
Atlas_Id 62095
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16618256 and ends at 16630906 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CROCCP2 (1p36.13) / ANKDD1A (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CROCCP2   28170
Cards
Entrez_Gene (NCBI)CROCCP2  84809  ciliary rootlet coiled-coil, rootletin pseudogene 2
AliasesCROCCL1
GeneCards (Weizmann)CROCCP2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:16618256-16630906 [Contig_View]  CROCCP2 [Vega]
TCGA cBioPortalCROCCP2
AceView (NCBI)CROCCP2
Genatlas (Paris)CROCCP2
WikiGenes84809
SOURCE (Princeton)CROCCP2
Genetics Home Reference (NIH)CROCCP2
Genomic and cartography
GoldenPath hg38 (UCSC)CROCCP2  -     chr1:16618256-16630906 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CROCCP2  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblCROCCP2 - 1p36.13 [CytoView hg19]  CROCCP2 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBICROCCP2 [Mapview hg19]  CROCCP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA584096 AK054737 AK090414 AK123337 AK128484
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CROCCP2
Cluster EST : UnigeneHs.733729 [ NCBI ]
CGAP (NCI)Hs.733729
Gene ExpressionCROCCP2 [ NCBI-GEO ]   CROCCP2 [ EBI - ARRAY_EXPRESS ]   CROCCP2 [ SEEK ]   CROCCP2 [ MEM ]
Gene Expression Viewer (FireBrowse)CROCCP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84809
GTEX Portal (Tissue expression)CROCCP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86T23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86T23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86T23
Splice isoforms : SwissVarQ86T23
PhosPhoSitePlusQ86T23
Domains : Interpro (EBI)Rootletin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CROCCP2
DMDM Disease mutations84809
Blocks (Seattle)CROCCP2
SuperfamilyQ86T23
Peptide AtlasQ86T23
Protein Interaction databases
DIP (DOE-UCLA)Q86T23
IntAct (EBI)Q86T23
BioGRIDCROCCP2
STRING (EMBL)CROCCP2
ZODIACCROCCP2
Ontologies - Pathways
QuickGOQ86T23
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCROCCP2
Atlas of Cancer Signalling NetworkCROCCP2
Wikipedia pathwaysCROCCP2
Orthology - Evolution
OrthoDB84809
Phylogenetic Trees/Animal Genes : TreeFamCROCCP2
HOVERGENQ86T23
HOGENOMQ86T23
Homologs : HomoloGeneCROCCP2
Homology/Alignments : Family Browser (UCSC)CROCCP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCROCCP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CROCCP2
dbVarCROCCP2
ClinVarCROCCP2
1000_GenomesCROCCP2 
Exome Variant ServerCROCCP2
ExAC (Exome Aggregation Consortium)CROCCP2 (select the gene name)
Genetic variants : HAPMAP84809
Genomic Variants (DGV)CROCCP2 [DGVbeta]
DECIPHERCROCCP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCROCCP2 
Mutations
ICGC Data PortalCROCCP2 
TCGA Data PortalCROCCP2 
Broad Tumor PortalCROCCP2
OASIS PortalCROCCP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCROCCP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CROCCP2
DgiDB (Drug Gene Interaction Database)CROCCP2
DoCM (Curated mutations)CROCCP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CROCCP2 (select a term)
intoGenCROCCP2
Cancer3DCROCCP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCROCCP2
Genetic Testing Registry CROCCP2
NextProtQ86T23 [Medical]
TSGene84809
GENETestsCROCCP2
Target ValidationCROCCP2
Huge Navigator CROCCP2 [HugePedia]
snp3D : Map Gene to Disease84809
BioCentury BCIQCROCCP2
ClinGenCROCCP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84809
Clinical trialCROCCP2
Miscellaneous
canSAR (ICR)CROCCP2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCROCCP2
EVEXCROCCP2
GoPubMedCROCCP2
iHOPCROCCP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:23 CEST 2017

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