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CROCCP3 (ciliary rootlet coiled-coil, rootletin pseudogene 3)

Identity

Alias_namesCROCCL2
ciliary rootlet coiled-coil, rootletin-like 2
Alias_symbol (synonym)KIAA1922
Other aliasdJ798A10.2
HGNC (Hugo) CROCCP3
LocusID (NCBI) 114819
Atlas_Id 62096
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 16467436 and ends at 16492701 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CROCCP3   29405
Cards
Entrez_Gene (NCBI)CROCCP3  114819  ciliary rootlet coiled-coil, rootletin pseudogene 3
AliasesCROCCL2; dJ798A10.2
GeneCards (Weizmann)CROCCP3
Ensembl hg19 (Hinxton)ENSG00000080947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000080947 [Gene_View]  chr1:16467436-16492701 [Contig_View]  CROCCP3 [Vega]
ICGC DataPortalENSG00000080947
TCGA cBioPortalCROCCP3
AceView (NCBI)CROCCP3
Genatlas (Paris)CROCCP3
WikiGenes114819
SOURCE (Princeton)CROCCP3
Genetics Home Reference (NIH)CROCCP3
Genomic and cartography
GoldenPath hg38 (UCSC)CROCCP3  -     chr1:16467436-16492701 -  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CROCCP3  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblCROCCP3 - 1p36.13 [CytoView hg19]  CROCCP3 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBICROCCP3 [Mapview hg19]  CROCCP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB067509 BC033082
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CROCCP3
Cluster EST : UnigeneHs.597881 [ NCBI ]
CGAP (NCI)Hs.597881
Alternative Splicing GalleryENSG00000080947
Gene ExpressionCROCCP3 [ NCBI-GEO ]   CROCCP3 [ EBI - ARRAY_EXPRESS ]   CROCCP3 [ SEEK ]   CROCCP3 [ MEM ]
Gene Expression Viewer (FireBrowse)CROCCP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114819
GTEX Portal (Tissue expression)CROCCP3
Human Protein AtlasENSG00000080947-CROCCP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVE0
Splice isoforms : SwissVarQ8IVE0
PhosPhoSitePlusQ8IVE0
Domains : Interpro (EBI)Rootletin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CROCCP3
DMDM Disease mutations114819
Blocks (Seattle)CROCCP3
SuperfamilyQ8IVE0
Human Protein Atlas [tissue]ENSG00000080947-CROCCP3 [tissue]
Peptide AtlasQ8IVE0
IPIIPI00785205   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVE0
IntAct (EBI)Q8IVE0
FunCoupENSG00000080947
BioGRIDCROCCP3
STRING (EMBL)CROCCP3
ZODIACCROCCP3
Ontologies - Pathways
QuickGOQ8IVE0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCROCCP3
Atlas of Cancer Signalling NetworkCROCCP3
Wikipedia pathwaysCROCCP3
Orthology - Evolution
OrthoDB114819
GeneTree (enSembl)ENSG00000080947
Phylogenetic Trees/Animal Genes : TreeFamCROCCP3
HOVERGENQ8IVE0
HOGENOMQ8IVE0
Homologs : HomoloGeneCROCCP3
Homology/Alignments : Family Browser (UCSC)CROCCP3
Gene fusions - Rearrangements
Fusion: Tumor Portal CROCCP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCROCCP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CROCCP3
dbVarCROCCP3
ClinVarCROCCP3
1000_GenomesCROCCP3 
Exome Variant ServerCROCCP3
ExAC (Exome Aggregation Consortium)ENSG00000080947
GNOMAD BrowserENSG00000080947
Genetic variants : HAPMAP114819
Genomic Variants (DGV)CROCCP3 [DGVbeta]
DECIPHERCROCCP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCROCCP3 
Mutations
ICGC Data PortalCROCCP3 
TCGA Data PortalCROCCP3 
Broad Tumor PortalCROCCP3
OASIS PortalCROCCP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCROCCP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CROCCP3
DgiDB (Drug Gene Interaction Database)CROCCP3
DoCM (Curated mutations)CROCCP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CROCCP3 (select a term)
intoGenCROCCP3
Cancer3DCROCCP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCROCCP3
Genetic Testing Registry CROCCP3
NextProtQ8IVE0 [Medical]
TSGene114819
GENETestsCROCCP3
Target ValidationCROCCP3
Huge Navigator CROCCP3 [HugePedia]
snp3D : Map Gene to Disease114819
BioCentury BCIQCROCCP3
ClinGenCROCCP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114819
Clinical trialCROCCP3
Miscellaneous
canSAR (ICR)CROCCP3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCROCCP3
EVEXCROCCP3
GoPubMedCROCCP3
iHOPCROCCP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:24 CET 2017

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