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CROT (carnitine O-octanoyltransferase)

Identity

Alias_symbol (synonym)COT
Other alias
HGNC (Hugo) CROT
LocusID (NCBI) 54677
Atlas_Id 62097
Location 7q21.12  [Link to chromosome band 7q21]
Location_base_pair Starts at 87345635 and ends at 87399796 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CROT   2366
Cards
Entrez_Gene (NCBI)CROT  54677  carnitine O-octanoyltransferase
AliasesCOT
GeneCards (Weizmann)CROT
Ensembl hg19 (Hinxton)ENSG00000005469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005469 [Gene_View]  chr7:87345635-87399796 [Contig_View]  CROT [Vega]
ICGC DataPortalENSG00000005469
TCGA cBioPortalCROT
AceView (NCBI)CROT
Genatlas (Paris)CROT
WikiGenes54677
SOURCE (Princeton)CROT
Genetics Home Reference (NIH)CROT
Genomic and cartography
GoldenPath hg38 (UCSC)CROT  -     chr7:87345635-87399796 +  7q21.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CROT  -     7q21.12   [Description]    (hg19-Feb_2009)
EnsemblCROT - 7q21.12 [CytoView hg19]  CROT - 7q21.12 [CytoView hg38]
Mapping of homologs : NCBICROT [Mapview hg19]  CROT [Mapview hg38]
OMIM606090   
Gene and transcription
Genbank (Entrez)AA062685 AF052187 AF073770 AF168793 AK127901
RefSeq transcript (Entrez)NM_001143935 NM_001243745 NM_021151
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CROT
Cluster EST : UnigeneHs.125039 [ NCBI ]
CGAP (NCI)Hs.125039
Alternative Splicing GalleryENSG00000005469
Gene ExpressionCROT [ NCBI-GEO ]   CROT [ EBI - ARRAY_EXPRESS ]   CROT [ SEEK ]   CROT [ MEM ]
Gene Expression Viewer (FireBrowse)CROT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54677
GTEX Portal (Tissue expression)CROT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKG9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKG9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKG9
Splice isoforms : SwissVarQ9UKG9
PhosPhoSitePlusQ9UKG9
Domaine pattern : Prosite (Expaxy)ACYLTRANSF_C_1 (PS00439)    ACYLTRANSF_C_2 (PS00440)   
Domains : Interpro (EBI)Carn_acyl_trans   
Domain families : Pfam (Sanger)Carn_acyltransf (PF00755)   
Domain families : Pfam (NCBI)pfam00755   
Conserved Domain (NCBI)CROT
DMDM Disease mutations54677
Blocks (Seattle)CROT
SuperfamilyQ9UKG9
Human Protein AtlasENSG00000005469
Peptide AtlasQ9UKG9
HPRD12081
IPIIPI00292763   IPI00921172   IPI00384241   IPI00924730   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKG9
IntAct (EBI)Q9UKG9
FunCoupENSG00000005469
BioGRIDCROT
STRING (EMBL)CROT
ZODIACCROT
Ontologies - Pathways
QuickGOQ9UKG9
Ontology : AmiGOreceptor binding  mitochondrion  peroxisome  peroxisome  peroxisomal matrix  generation of precursor metabolites and energy  fatty acid metabolic process  fatty acid beta-oxidation  carnitine O-octanoyltransferase activity  carnitine O-octanoyltransferase activity  carnitine metabolic process  fatty acid transport  coenzyme A metabolic process  fatty acid beta-oxidation using acyl-CoA oxidase  intracellular membrane-bounded organelle  medium-chain fatty acid metabolic process  
Ontology : EGO-EBIreceptor binding  mitochondrion  peroxisome  peroxisome  peroxisomal matrix  generation of precursor metabolites and energy  fatty acid metabolic process  fatty acid beta-oxidation  carnitine O-octanoyltransferase activity  carnitine O-octanoyltransferase activity  carnitine metabolic process  fatty acid transport  coenzyme A metabolic process  fatty acid beta-oxidation using acyl-CoA oxidase  intracellular membrane-bounded organelle  medium-chain fatty acid metabolic process  
Pathways : KEGGPeroxisome   
NDEx NetworkCROT
Atlas of Cancer Signalling NetworkCROT
Wikipedia pathwaysCROT
Orthology - Evolution
OrthoDB54677
GeneTree (enSembl)ENSG00000005469
Phylogenetic Trees/Animal Genes : TreeFamCROT
HOVERGENQ9UKG9
HOGENOMQ9UKG9
Homologs : HomoloGeneCROT
Homology/Alignments : Family Browser (UCSC)CROT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCROT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CROT
dbVarCROT
ClinVarCROT
1000_GenomesCROT 
Exome Variant ServerCROT
ExAC (Exome Aggregation Consortium)CROT (select the gene name)
Genetic variants : HAPMAP54677
Genomic Variants (DGV)CROT [DGVbeta]
DECIPHERCROT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCROT 
Mutations
ICGC Data PortalCROT 
TCGA Data PortalCROT 
Broad Tumor PortalCROT
OASIS PortalCROT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCROT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCROT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CROT
DgiDB (Drug Gene Interaction Database)CROT
DoCM (Curated mutations)CROT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CROT (select a term)
intoGenCROT
Cancer3DCROT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606090   
Orphanet
MedgenCROT
Genetic Testing Registry CROT
NextProtQ9UKG9 [Medical]
TSGene54677
GENETestsCROT
Huge Navigator CROT [HugePedia]
snp3D : Map Gene to Disease54677
BioCentury BCIQCROT
ClinGenCROT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54677
Chemical/Pharm GKB GenePA26887
Clinical trialCROT
Miscellaneous
canSAR (ICR)CROT (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCROT
EVEXCROT
GoPubMedCROT
iHOPCROT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:06:57 CEST 2017

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