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CRTAC1 (cartilage acidic protein 1)

Identity

Alias_symbol (synonym)FLJ10320
CEP-68
ASPIC1
Other aliasASPIC
HGNC (Hugo) CRTAC1
LocusID (NCBI) 55118
Atlas_Id 62099
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 97879626 and ends at 98030828 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EXOSC1 (10q24.1) / CRTAC1 (10q24.2)MMS19 (10q24.1) / CRTAC1 (10q24.2)RRP12 (10q24.1) / CRTAC1 (10q24.2)
RRP12 CRTAC1MMS19 CRTAC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRTAC1   14882
Cards
Entrez_Gene (NCBI)CRTAC1  55118  cartilage acidic protein 1
AliasesASPIC; ASPIC1; CEP-68
GeneCards (Weizmann)CRTAC1
Ensembl hg19 (Hinxton)ENSG00000095713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000095713 [Gene_View]  chr10:97879626-98030828 [Contig_View]  CRTAC1 [Vega]
ICGC DataPortalENSG00000095713
TCGA cBioPortalCRTAC1
AceView (NCBI)CRTAC1
Genatlas (Paris)CRTAC1
WikiGenes55118
SOURCE (Princeton)CRTAC1
Genetics Home Reference (NIH)CRTAC1
Genomic and cartography
GoldenPath hg38 (UCSC)CRTAC1  -     chr10:97879626-98030828 -  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRTAC1  -     10q24.2   [Description]    (hg19-Feb_2009)
EnsemblCRTAC1 - 10q24.2 [CytoView hg19]  CRTAC1 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBICRTAC1 [Mapview hg19]  CRTAC1 [Mapview hg38]
OMIM606276   
Gene and transcription
Genbank (Entrez)AA485276 AJ276171 AJ276171 AJ276171 AJ279016
RefSeq transcript (Entrez)NM_001206528 NM_018058
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRTAC1
Cluster EST : UnigeneHs.500736 [ NCBI ]
CGAP (NCI)Hs.500736
Alternative Splicing GalleryENSG00000095713
Gene ExpressionCRTAC1 [ NCBI-GEO ]   CRTAC1 [ EBI - ARRAY_EXPRESS ]   CRTAC1 [ SEEK ]   CRTAC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRTAC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55118
GTEX Portal (Tissue expression)CRTAC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ79
Splice isoforms : SwissVarQ9NQ79
PhosPhoSitePlusQ9NQ79
Domaine pattern : Prosite (Expaxy)EGF_CA (PS01187)   
Domains : Interpro (EBI)Crtac1    EGF-like_Ca-bd_dom    EGF_Ca-bd_CS    UnbV_ASPIC   
Domain families : Pfam (Sanger)EGF_CA (PF07645)    UnbV_ASPIC (PF07593)   
Domain families : Pfam (NCBI)pfam07645    pfam07593   
Domain families : Smart (EMBL)EGF_CA (SM00179)  
Conserved Domain (NCBI)CRTAC1
DMDM Disease mutations55118
Blocks (Seattle)CRTAC1
SuperfamilyQ9NQ79
Human Protein AtlasENSG00000095713
Peptide AtlasQ9NQ79
HPRD10447
IPIIPI00451624   IPI00451625   IPI00451626   IPI00642011   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ79
IntAct (EBI)Q9NQ79
FunCoupENSG00000095713
BioGRIDCRTAC1
STRING (EMBL)CRTAC1
ZODIACCRTAC1
Ontologies - Pathways
QuickGOQ9NQ79
Ontology : AmiGOcalcium ion binding  protein binding  proteinaceous extracellular matrix  axonal fasciculation  olfactory bulb development  growth cone  extracellular exosome  negative regulation of receptor binding  
Ontology : EGO-EBIcalcium ion binding  protein binding  proteinaceous extracellular matrix  axonal fasciculation  olfactory bulb development  growth cone  extracellular exosome  negative regulation of receptor binding  
NDEx NetworkCRTAC1
Atlas of Cancer Signalling NetworkCRTAC1
Wikipedia pathwaysCRTAC1
Orthology - Evolution
OrthoDB55118
GeneTree (enSembl)ENSG00000095713
Phylogenetic Trees/Animal Genes : TreeFamCRTAC1
HOVERGENQ9NQ79
HOGENOMQ9NQ79
Homologs : HomoloGeneCRTAC1
Homology/Alignments : Family Browser (UCSC)CRTAC1
Gene fusions - Rearrangements
Fusion: TCGARRP12 CRTAC1
Fusion: TCGAMMS19 CRTAC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRTAC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRTAC1
dbVarCRTAC1
ClinVarCRTAC1
1000_GenomesCRTAC1 
Exome Variant ServerCRTAC1
ExAC (Exome Aggregation Consortium)CRTAC1 (select the gene name)
Genetic variants : HAPMAP55118
Genomic Variants (DGV)CRTAC1 [DGVbeta]
DECIPHERCRTAC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRTAC1 
Mutations
ICGC Data PortalCRTAC1 
TCGA Data PortalCRTAC1 
Broad Tumor PortalCRTAC1
OASIS PortalCRTAC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRTAC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRTAC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRTAC1
DgiDB (Drug Gene Interaction Database)CRTAC1
DoCM (Curated mutations)CRTAC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRTAC1 (select a term)
intoGenCRTAC1
Cancer3DCRTAC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606276   
Orphanet
MedgenCRTAC1
Genetic Testing Registry CRTAC1
NextProtQ9NQ79 [Medical]
TSGene55118
GENETestsCRTAC1
Target ValidationCRTAC1
Huge Navigator CRTAC1 [HugePedia]
snp3D : Map Gene to Disease55118
BioCentury BCIQCRTAC1
ClinGenCRTAC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55118
Chemical/Pharm GKB GenePA26899
Clinical trialCRTAC1
Miscellaneous
canSAR (ICR)CRTAC1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRTAC1
EVEXCRTAC1
GoPubMedCRTAC1
iHOPCRTAC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:34 CEST 2017

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