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CRTAP (cartilage associated protein)

Identity

Alias (NCBI)CASP
LEPREL3
OI7
P3H5
HGNC (Hugo) CRTAP
HGNC Alias symbCASP
LEPREL3
P3H5
HGNC Alias nameleprecan-like 3
 prolyl 3-hydroxylase family member 5 (non-enzymatic)
LocusID (NCBI) 10491
Atlas_Id 62100
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 33113958 and ends at 33147773 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARPC2 (2q35) / CRTAP (3p22.3)CRTAP (3p22.3) / CRTAP (3p22.3)CRTAP (3p22.3) / FGG (4q31.3)
CRTAP (3p22.3) / MSRA (8p23.1)CRTAP (3p22.3) / PPP2R5C (14q32.31)CRTAP (3p22.3) / RTCB (22q12.3)
KHSRP (19p13.3) / CRTAP (3p22.3)SRP54 (14q13.2) / CRTAP (3p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CRTAP   2379
LRG (Locus Reference Genomic)LRG_4
Cards
Entrez_Gene (NCBI)CRTAP    cartilage associated protein
AliasesCASP; LEPREL3; OI7; P3H5
GeneCards (Weizmann)CRTAP
Ensembl hg19 (Hinxton)ENSG00000170275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170275 [Gene_View]  ENSG00000170275 [Sequence]  chr3:33113958-33147773 [Contig_View]  CRTAP [Vega]
ICGC DataPortalENSG00000170275
TCGA cBioPortalCRTAP
AceView (NCBI)CRTAP
Genatlas (Paris)CRTAP
SOURCE (Princeton)CRTAP
Genetics Home Reference (NIH)CRTAP
Genomic and cartography
GoldenPath hg38 (UCSC)CRTAP  -     chr3:33113958-33147773 +  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRTAP  -     3p22.3   [Description]    (hg19-Feb_2009)
GoldenPathCRTAP - 3p22.3 [CytoView hg19]  CRTAP - 3p22.3 [CytoView hg38]
ImmunoBaseENSG00000170275
genome Data Viewer NCBICRTAP [Mapview hg19]  
OMIM605497   610682   
Gene and transcription
Genbank (Entrez)AJ006470 AK001634 AK027235 AK075401 AK091772
RefSeq transcript (Entrez)NM_006371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRTAP
Alternative Splicing GalleryENSG00000170275
Gene ExpressionCRTAP [ NCBI-GEO ]   CRTAP [ EBI - ARRAY_EXPRESS ]   CRTAP [ SEEK ]   CRTAP [ MEM ]
Gene Expression Viewer (FireBrowse)CRTAP [ Firebrowse - Broad ]
GenevisibleExpression of CRTAP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10491
GTEX Portal (Tissue expression)CRTAP
Human Protein AtlasENSG00000170275-CRTAP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75718   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75718  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75718
Splice isoforms : SwissVarO75718
PhosPhoSitePlusO75718
Domains : Interpro (EBI)Crtap    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CRTAP
Blocks (Seattle)CRTAP
SuperfamilyO75718
Human Protein Atlas [tissue]ENSG00000170275-CRTAP [tissue]
Peptide AtlasO75718
HPRD16110
IPIIPI00748502   IPI00902594   IPI01014723   IPI01009252   IPI00793277   
Protein Interaction databases
DIP (DOE-UCLA)O75718
IntAct (EBI)O75718
BioGRIDCRTAP
STRING (EMBL)CRTAP
ZODIACCRTAP
Ontologies - Pathways
QuickGOO75718
Ontology : AmiGOprotein binding  extracellular space  endoplasmic reticulum  endoplasmic reticulum lumen  spermatogenesis  peptidyl-proline hydroxylation to 3-hydroxy-L-proline  protein-containing complex  protein stabilization  chaperone-mediated protein folding  negative regulation of post-translational protein modification  
Ontology : EGO-EBIprotein binding  extracellular space  endoplasmic reticulum  endoplasmic reticulum lumen  spermatogenesis  peptidyl-proline hydroxylation to 3-hydroxy-L-proline  protein-containing complex  protein stabilization  chaperone-mediated protein folding  negative regulation of post-translational protein modification  
NDEx NetworkCRTAP
Atlas of Cancer Signalling NetworkCRTAP
Wikipedia pathwaysCRTAP
Orthology - Evolution
OrthoDB10491
GeneTree (enSembl)ENSG00000170275
Phylogenetic Trees/Animal Genes : TreeFamCRTAP
HOGENOMO75718
Homologs : HomoloGeneCRTAP
Homology/Alignments : Family Browser (UCSC)CRTAP
Gene fusions - Rearrangements
Fusion : QuiverCRTAP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRTAP [hg38]
dbVarCRTAP
ClinVarCRTAP
MonarchCRTAP
1000_GenomesCRTAP 
Exome Variant ServerCRTAP
GNOMAD BrowserENSG00000170275
Varsome BrowserCRTAP
Genomic Variants (DGV)CRTAP [DGVbeta]
DECIPHERCRTAP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRTAP 
Mutations
ICGC Data PortalCRTAP 
TCGA Data PortalCRTAP 
Broad Tumor PortalCRTAP
OASIS PortalCRTAP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRTAP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCRTAP
Mutations and Diseases : HGMDCRTAP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Osteogenesis Imperfecta Variant Database
BioMutasearch CRTAP
DgiDB (Drug Gene Interaction Database)CRTAP
DoCM (Curated mutations)CRTAP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRTAP (select a term)
intoGenCRTAP
Cancer3DCRTAP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605497    610682   
Orphanet18792    18793    18794   
DisGeNETCRTAP
MedgenCRTAP
Genetic Testing Registry CRTAP
NextProtO75718 [Medical]
GENETestsCRTAP
Target ValidationCRTAP
Huge Navigator CRTAP [HugePedia]
ClinGenCRTAP
Clinical trials, drugs, therapy
MyCancerGenomeCRTAP
Protein Interactions : CTD
Pharm GKB GenePA26900
Clinical trialCRTAP
Miscellaneous
canSAR (ICR)CRTAP (select the gene name)
HarmonizomeCRTAP
DataMed IndexCRTAP
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRTAP
EVEXCRTAP
GoPubMedCRTAP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:50:43 CET 2020
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