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CRYBA2 (crystallin beta A2)

Identity

Alias_namescrystallin, beta A2
Other aliasCTRCT42
HGNC (Hugo) CRYBA2
LocusID (NCBI) 1412
Atlas_Id 62102
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 218990190 and ends at 218993405 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PIK3R2 (19p13.11) / CRYBA2 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYBA2   2395
Cards
Entrez_Gene (NCBI)CRYBA2  1412  crystallin beta A2
AliasesCTRCT42
GeneCards (Weizmann)CRYBA2
Ensembl hg19 (Hinxton)ENSG00000163499 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163499 [Gene_View]  chr2:218990190-218993405 [Contig_View]  CRYBA2 [Vega]
ICGC DataPortalENSG00000163499
TCGA cBioPortalCRYBA2
AceView (NCBI)CRYBA2
Genatlas (Paris)CRYBA2
WikiGenes1412
SOURCE (Princeton)CRYBA2
Genetics Home Reference (NIH)CRYBA2
Genomic and cartography
GoldenPath hg38 (UCSC)CRYBA2  -     chr2:218990190-218993405 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYBA2  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblCRYBA2 - 2q35 [CytoView hg19]  CRYBA2 - 2q35 [CytoView hg38]
Mapping of homologs : NCBICRYBA2 [Mapview hg19]  CRYBA2 [Mapview hg38]
OMIM115900   600836   
Gene and transcription
Genbank (Entrez)AF166331 BC006285 BF726935 BT007447
RefSeq transcript (Entrez)NM_057093 NM_057094
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYBA2
Cluster EST : UnigeneHs.415790 [ NCBI ]
CGAP (NCI)Hs.415790
Alternative Splicing GalleryENSG00000163499
Gene ExpressionCRYBA2 [ NCBI-GEO ]   CRYBA2 [ EBI - ARRAY_EXPRESS ]   CRYBA2 [ SEEK ]   CRYBA2 [ MEM ]
Gene Expression Viewer (FireBrowse)CRYBA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1412
GTEX Portal (Tissue expression)CRYBA2
Human Protein AtlasENSG00000163499-CRYBA2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53672   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53672  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53672
Splice isoforms : SwissVarP53672
PhosPhoSitePlusP53672
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel   
Domain families : Pfam (Sanger)Crystall (PF00030)   
Domain families : Pfam (NCBI)pfam00030   
Domain families : Smart (EMBL)XTALbg (SM00247)  
Conserved Domain (NCBI)CRYBA2
DMDM Disease mutations1412
Blocks (Seattle)CRYBA2
SuperfamilyP53672
Human Protein Atlas [tissue]ENSG00000163499-CRYBA2 [tissue]
Peptide AtlasP53672
HPRD02905
IPIIPI00220153   IPI00927890   
Protein Interaction databases
DIP (DOE-UCLA)P53672
IntAct (EBI)P53672
FunCoupENSG00000163499
BioGRIDCRYBA2
STRING (EMBL)CRYBA2
ZODIACCRYBA2
Ontologies - Pathways
QuickGOP53672
Ontology : AmiGOlens development in camera-type eye  molecular_function  structural constituent of eye lens  protein binding  cellular_component  biological_process  protein homodimerization activity  
Ontology : EGO-EBIlens development in camera-type eye  molecular_function  structural constituent of eye lens  protein binding  cellular_component  biological_process  protein homodimerization activity  
NDEx NetworkCRYBA2
Atlas of Cancer Signalling NetworkCRYBA2
Wikipedia pathwaysCRYBA2
Orthology - Evolution
OrthoDB1412
GeneTree (enSembl)ENSG00000163499
Phylogenetic Trees/Animal Genes : TreeFamCRYBA2
HOVERGENP53672
HOGENOMP53672
Homologs : HomoloGeneCRYBA2
Homology/Alignments : Family Browser (UCSC)CRYBA2
Gene fusions - Rearrangements
Fusion: Tumor Portal CRYBA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYBA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYBA2
dbVarCRYBA2
ClinVarCRYBA2
1000_GenomesCRYBA2 
Exome Variant ServerCRYBA2
ExAC (Exome Aggregation Consortium)ENSG00000163499
GNOMAD BrowserENSG00000163499
Genetic variants : HAPMAP1412
Genomic Variants (DGV)CRYBA2 [DGVbeta]
DECIPHERCRYBA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYBA2 
Mutations
ICGC Data PortalCRYBA2 
TCGA Data PortalCRYBA2 
Broad Tumor PortalCRYBA2
OASIS PortalCRYBA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYBA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYBA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CRYBA2
DgiDB (Drug Gene Interaction Database)CRYBA2
DoCM (Curated mutations)CRYBA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYBA2 (select a term)
intoGenCRYBA2
Cancer3DCRYBA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM115900    600836   
Orphanet14005    14008   
MedgenCRYBA2
Genetic Testing Registry CRYBA2
NextProtP53672 [Medical]
TSGene1412
GENETestsCRYBA2
Target ValidationCRYBA2
Huge Navigator CRYBA2 [HugePedia]
snp3D : Map Gene to Disease1412
BioCentury BCIQCRYBA2
ClinGenCRYBA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1412
Chemical/Pharm GKB GenePA26909
Clinical trialCRYBA2
Miscellaneous
canSAR (ICR)CRYBA2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYBA2
EVEXCRYBA2
GoPubMedCRYBA2
iHOPCRYBA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:25 CET 2017

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