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CRYBG1 (crystallin beta-gamma domain containing 1)

Identity

Other aliasAIM1
ST4
HGNC (Hugo) CRYBG1
LocusID (NCBI) 202
Atlas_Id 56781
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 106511855 and ends at 106570449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AIM1 6q21 / ARMC2 6q21AIM1 6q21 / MYB 6q23.3BEND3 6q21 / AIM1 6q21
PREP 6q21 / AIM1 6q21SESN1 6q21 / AIM1 6q21SOBP 6q21 / AIM1 6q21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYBG1   356
Cards
Entrez_Gene (NCBI)CRYBG1  202  crystallin beta-gamma domain containing 1
AliasesAIM1; ST4
GeneCards (Weizmann)CRYBG1
Ensembl hg19 (Hinxton)ENSG00000112297 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112297 [Gene_View]  ENSG00000112297 [Sequence]  chr6:106511855-106570449 [Contig_View]  CRYBG1 [Vega]
ICGC DataPortalENSG00000112297
TCGA cBioPortalCRYBG1
AceView (NCBI)CRYBG1
Genatlas (Paris)CRYBG1
WikiGenes202
SOURCE (Princeton)CRYBG1
Genetics Home Reference (NIH)CRYBG1
Genomic and cartography
GoldenPath hg38 (UCSC)CRYBG1  -     chr6:106511855-106570449 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYBG1  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblCRYBG1 - 6q21 [CytoView hg19]  CRYBG1 - 6q21 [CytoView hg38]
Mapping of homologs : NCBICRYBG1 [Mapview hg19]  CRYBG1 [Mapview hg38]
OMIM601797   
Gene and transcription
Genbank (Entrez)AA574200 AI765826 AK025693 AK056705 AK125137
RefSeq transcript (Entrez)NM_001624
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYBG1
Cluster EST : UnigeneHs.744905 [ NCBI ]
CGAP (NCI)Hs.744905
Alternative Splicing GalleryENSG00000112297
Gene ExpressionCRYBG1 [ NCBI-GEO ]   CRYBG1 [ EBI - ARRAY_EXPRESS ]   CRYBG1 [ SEEK ]   CRYBG1 [ MEM ]
Gene Expression Viewer (FireBrowse)CRYBG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)202
GTEX Portal (Tissue expression)CRYBG1
Human Protein AtlasENSG00000112297-CRYBG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4K1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4K1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4K1
Splice isoforms : SwissVarQ9Y4K1
PhosPhoSitePlusQ9Y4K1
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)    RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-like    Ricin_B-like_lectins    Ricin_B_lectin   
Domain families : Pfam (Sanger)Crystall (PF00030)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00030    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  XTALbg (SM00247)  
Conserved Domain (NCBI)CRYBG1
DMDM Disease mutations202
Blocks (Seattle)CRYBG1
PDB (SRS)2DAD    3CW3   
PDB (PDBSum)2DAD    3CW3   
PDB (IMB)2DAD    3CW3   
PDB (RSDB)2DAD    3CW3   
Structural Biology KnowledgeBase2DAD    3CW3   
SCOP (Structural Classification of Proteins)2DAD    3CW3   
CATH (Classification of proteins structures)2DAD    3CW3   
SuperfamilyQ9Y4K1
Human Protein Atlas [tissue]ENSG00000112297-CRYBG1 [tissue]
Peptide AtlasQ9Y4K1
IPIIPI00294840   IPI01014316   IPI00045122   IPI00978477   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4K1
IntAct (EBI)Q9Y4K1
FunCoupENSG00000112297
BioGRIDCRYBG1
STRING (EMBL)CRYBG1
ZODIACCRYBG1
Ontologies - Pathways
QuickGOQ9Y4K1
Ontology : AmiGOmolecular_function  cellular_component  biological_process  carbohydrate binding  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  carbohydrate binding  
NDEx NetworkCRYBG1
Atlas of Cancer Signalling NetworkCRYBG1
Wikipedia pathwaysCRYBG1
Orthology - Evolution
OrthoDB202
GeneTree (enSembl)ENSG00000112297
Phylogenetic Trees/Animal Genes : TreeFamCRYBG1
HOVERGENQ9Y4K1
HOGENOMQ9Y4K1
Homologs : HomoloGeneCRYBG1
Homology/Alignments : Family Browser (UCSC)CRYBG1
Gene fusions - Rearrangements
Fusion : MitelmanAIM1/MYB [6q21/6q23.3]  
Fusion PortalAIM1 6q21 ARMC2 6q21 BRCA
Fusion PortalAIM1 6q21 MYB 6q23.3 BRCA
Fusion PortalBEND3 6q21 AIM1 6q21 LGG
Fusion PortalPREP 6q21 AIM1 6q21 BRCA
Fusion PortalSESN1 6q21 AIM1 6q21 BRCA
Fusion PortalSOBP 6q21 AIM1 6q21 GBM
Fusion : QuiverCRYBG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYBG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYBG1
dbVarCRYBG1
ClinVarCRYBG1
1000_GenomesCRYBG1 
Exome Variant ServerCRYBG1
ExAC (Exome Aggregation Consortium)ENSG00000112297
GNOMAD BrowserENSG00000112297
Varsome BrowserCRYBG1
Genetic variants : HAPMAP202
Genomic Variants (DGV)CRYBG1 [DGVbeta]
DECIPHERCRYBG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYBG1 
Mutations
ICGC Data PortalCRYBG1 
TCGA Data PortalCRYBG1 
Broad Tumor PortalCRYBG1
OASIS PortalCRYBG1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCRYBG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRYBG1
DgiDB (Drug Gene Interaction Database)CRYBG1
DoCM (Curated mutations)CRYBG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYBG1 (select a term)
intoGenCRYBG1
Cancer3DCRYBG1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601797   
Orphanet
DisGeNETCRYBG1
MedgenCRYBG1
Genetic Testing Registry CRYBG1
NextProtQ9Y4K1 [Medical]
TSGene202
GENETestsCRYBG1
Target ValidationCRYBG1
Huge Navigator CRYBG1 [HugePedia]
snp3D : Map Gene to Disease202
BioCentury BCIQCRYBG1
ClinGenCRYBG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD202
Chemical/Pharm GKB GenePA24649
Clinical trialCRYBG1
Miscellaneous
canSAR (ICR)CRYBG1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYBG1
EVEXCRYBG1
GoPubMedCRYBG1
iHOPCRYBG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:00:21 CET 2018

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