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CRYBG2 (crystallin beta-gamma domain containing 2)

Identity

Alias_namesAIM1L
absent in melanoma 1 like
Alias_symbol (synonym)FLJ38020
Other alias
HGNC (Hugo) CRYBG2
LocusID (NCBI) 55057
Atlas_Id 80039
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26321859 and ends at 26354130 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYBG2   17295
Cards
Entrez_Gene (NCBI)CRYBG2  55057  crystallin beta-gamma domain containing 2
AliasesAIM1L
GeneCards (Weizmann)CRYBG2
Ensembl hg19 (Hinxton)ENSG00000176092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176092 [Gene_View]  chr1:26321859-26354130 [Contig_View]  CRYBG2 [Vega]
ICGC DataPortalENSG00000176092
TCGA cBioPortalCRYBG2
AceView (NCBI)CRYBG2
Genatlas (Paris)CRYBG2
WikiGenes55057
SOURCE (Princeton)CRYBG2
Genetics Home Reference (NIH)CRYBG2
Genomic and cartography
GoldenPath hg38 (UCSC)CRYBG2  -     chr1:26321859-26354130 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYBG2  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblCRYBG2 - 1p36.11 [CytoView hg19]  CRYBG2 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBICRYBG2 [Mapview hg19]  CRYBG2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000902 AK095339 AL137264 BC136870 CD628848
RefSeq transcript (Entrez)NM_001039775 NM_017977
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYBG2
Cluster EST : UnigeneHs.128738 [ NCBI ]
CGAP (NCI)Hs.128738
Alternative Splicing GalleryENSG00000176092
Gene ExpressionCRYBG2 [ NCBI-GEO ]   CRYBG2 [ EBI - ARRAY_EXPRESS ]   CRYBG2 [ SEEK ]   CRYBG2 [ MEM ]
Gene Expression Viewer (FireBrowse)CRYBG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55057
GTEX Portal (Tissue expression)CRYBG2
Human Protein AtlasENSG00000176092-CRYBG2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N1P7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N1P7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N1P7
Splice isoforms : SwissVarQ8N1P7
PhosPhoSitePlusQ8N1P7
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)    RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel    Ricin_B_lectin   
Domain families : Pfam (Sanger)Crystall (PF00030)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00030    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  XTALbg (SM00247)  
Conserved Domain (NCBI)CRYBG2
DMDM Disease mutations55057
Blocks (Seattle)CRYBG2
SuperfamilyQ8N1P7
Human Protein Atlas [tissue]ENSG00000176092-CRYBG2 [tissue]
Peptide AtlasQ8N1P7
IPIIPI00385717   IPI00166211   IPI00743842   IPI00973010   IPI00977415   
Protein Interaction databases
DIP (DOE-UCLA)Q8N1P7
IntAct (EBI)Q8N1P7
FunCoupENSG00000176092
BioGRIDCRYBG2
STRING (EMBL)CRYBG2
ZODIACCRYBG2
Ontologies - Pathways
QuickGOQ8N1P7
Ontology : AmiGOcarbohydrate binding  
Ontology : EGO-EBIcarbohydrate binding  
NDEx NetworkCRYBG2
Atlas of Cancer Signalling NetworkCRYBG2
Wikipedia pathwaysCRYBG2
Orthology - Evolution
OrthoDB55057
GeneTree (enSembl)ENSG00000176092
Phylogenetic Trees/Animal Genes : TreeFamCRYBG2
HOVERGENQ8N1P7
HOGENOMQ8N1P7
Homologs : HomoloGeneCRYBG2
Homology/Alignments : Family Browser (UCSC)CRYBG2
Gene fusions - Rearrangements
Tumor Fusion PortalCRYBG2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYBG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYBG2
dbVarCRYBG2
ClinVarCRYBG2
1000_GenomesCRYBG2 
Exome Variant ServerCRYBG2
ExAC (Exome Aggregation Consortium)ENSG00000176092
GNOMAD BrowserENSG00000176092
Genetic variants : HAPMAP55057
Genomic Variants (DGV)CRYBG2 [DGVbeta]
DECIPHERCRYBG2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYBG2 
Mutations
ICGC Data PortalCRYBG2 
TCGA Data PortalCRYBG2 
Broad Tumor PortalCRYBG2
OASIS PortalCRYBG2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCRYBG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRYBG2
DgiDB (Drug Gene Interaction Database)CRYBG2
DoCM (Curated mutations)CRYBG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYBG2 (select a term)
intoGenCRYBG2
Cancer3DCRYBG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCRYBG2
MedgenCRYBG2
Genetic Testing Registry CRYBG2
NextProtQ8N1P7 [Medical]
TSGene55057
GENETestsCRYBG2
Target ValidationCRYBG2
Huge Navigator CRYBG2 [HugePedia]
snp3D : Map Gene to Disease55057
BioCentury BCIQCRYBG2
ClinGenCRYBG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55057
Chemical/Pharm GKB GenePA24650
Clinical trialCRYBG2
Miscellaneous
canSAR (ICR)CRYBG2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYBG2
EVEXCRYBG2
GoPubMedCRYBG2
iHOPCRYBG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:25:07 CET 2017

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