Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CRYBG3 (crystallin beta-gamma domain containing 3)

Identity

Alias_namesbeta-gamma crystallin domain containing 3
Alias_symbol (synonym)DKFZp667G2110
Other aliasvlAKAP
HGNC (Hugo) CRYBG3
LocusID (NCBI) 131544
Atlas_Id 62108
Location 3q11.2  [Link to chromosome band 3q11]
Location_base_pair Starts at 97822040 and ends at 97944986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRYBG3 (3q11.2) / IL20RB (3q22.3)DLG1 (3q29) / CRYBG3 (3q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYBG3   34427
Cards
Entrez_Gene (NCBI)CRYBG3  131544  crystallin beta-gamma domain containing 3
AliasesDKFZp667G2110; vlAKAP
GeneCards (Weizmann)CRYBG3
Ensembl hg19 (Hinxton)ENSG00000080200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000080200 [Gene_View]  chr3:97822040-97944986 [Contig_View]  CRYBG3 [Vega]
ICGC DataPortalENSG00000080200
TCGA cBioPortalCRYBG3
AceView (NCBI)CRYBG3
Genatlas (Paris)CRYBG3
WikiGenes131544
SOURCE (Princeton)CRYBG3
Genetics Home Reference (NIH)CRYBG3
Genomic and cartography
GoldenPath hg38 (UCSC)CRYBG3  -     chr3:97822040-97944986 +  3q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYBG3  -     3q11.2   [Description]    (hg19-Feb_2009)
EnsemblCRYBG3 - 3q11.2 [CytoView hg19]  CRYBG3 - 3q11.2 [CytoView hg38]
Mapping of homologs : NCBICRYBG3 [Mapview hg19]  CRYBG3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF451988 AK091199 AK098569 AK130907 AK296966
RefSeq transcript (Entrez)NM_153605
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYBG3
Cluster EST : UnigeneHs.733378 [ NCBI ]
CGAP (NCI)Hs.733378
Alternative Splicing GalleryENSG00000080200
Gene ExpressionCRYBG3 [ NCBI-GEO ]   CRYBG3 [ EBI - ARRAY_EXPRESS ]   CRYBG3 [ SEEK ]   CRYBG3 [ MEM ]
Gene Expression Viewer (FireBrowse)CRYBG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131544
GTEX Portal (Tissue expression)CRYBG3
Human Protein AtlasENSG00000080200-CRYBG3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68DQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68DQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68DQ2
Splice isoforms : SwissVarQ68DQ2
PhosPhoSitePlusQ68DQ2
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)    RICIN_B_LECTIN (PS50231)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel    Ricin_B_lectin   
Domain families : Pfam (Sanger)Crystall (PF00030)    Ricin_B_lectin (PF00652)   
Domain families : Pfam (NCBI)pfam00030    pfam00652   
Domain families : Smart (EMBL)RICIN (SM00458)  XTALbg (SM00247)  
Conserved Domain (NCBI)CRYBG3
DMDM Disease mutations131544
Blocks (Seattle)CRYBG3
SuperfamilyQ68DQ2
Human Protein Atlas [tissue]ENSG00000080200-CRYBG3 [tissue]
Peptide AtlasQ68DQ2
IPIIPI00401026   IPI00984700   
Protein Interaction databases
DIP (DOE-UCLA)Q68DQ2
IntAct (EBI)Q68DQ2
FunCoupENSG00000080200
BioGRIDCRYBG3
STRING (EMBL)CRYBG3
ZODIACCRYBG3
Ontologies - Pathways
QuickGOQ68DQ2
Ontology : AmiGOcarbohydrate binding  
Ontology : EGO-EBIcarbohydrate binding  
NDEx NetworkCRYBG3
Atlas of Cancer Signalling NetworkCRYBG3
Wikipedia pathwaysCRYBG3
Orthology - Evolution
OrthoDB131544
GeneTree (enSembl)ENSG00000080200
Phylogenetic Trees/Animal Genes : TreeFamCRYBG3
HOVERGENQ68DQ2
HOGENOMQ68DQ2
Homologs : HomoloGeneCRYBG3
Homology/Alignments : Family Browser (UCSC)CRYBG3
Gene fusions - Rearrangements
Fusion: Tumor Portal CRYBG3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYBG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYBG3
dbVarCRYBG3
ClinVarCRYBG3
1000_GenomesCRYBG3 
Exome Variant ServerCRYBG3
ExAC (Exome Aggregation Consortium)ENSG00000080200
GNOMAD BrowserENSG00000080200
Genetic variants : HAPMAP131544
Genomic Variants (DGV)CRYBG3 [DGVbeta]
DECIPHERCRYBG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYBG3 
Mutations
ICGC Data PortalCRYBG3 
TCGA Data PortalCRYBG3 
Broad Tumor PortalCRYBG3
OASIS PortalCRYBG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYBG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYBG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CRYBG3
DgiDB (Drug Gene Interaction Database)CRYBG3
DoCM (Curated mutations)CRYBG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYBG3 (select a term)
intoGenCRYBG3
Cancer3DCRYBG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCRYBG3
Genetic Testing Registry CRYBG3
NextProtQ68DQ2 [Medical]
TSGene131544
GENETestsCRYBG3
Target ValidationCRYBG3
Huge Navigator CRYBG3 [HugePedia]
snp3D : Map Gene to Disease131544
BioCentury BCIQCRYBG3
ClinGenCRYBG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131544
Chemical/Pharm GKB GenePA164718140
Clinical trialCRYBG3
Miscellaneous
canSAR (ICR)CRYBG3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYBG3
EVEXCRYBG3
GoPubMedCRYBG3
iHOPCRYBG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:43:27 CET 2017

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