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CRYGA (crystallin gamma A)

Identity

Alias_namesCRYG1
crystallin, gamma A
Alias_symbol (synonym)CRYG5
CRY-g-A
Other alias
HGNC (Hugo) CRYGA
LocusID (NCBI) 1418
Atlas_Id 62109
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 208160740 and ends at 208163573 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYGA   2408
Cards
Entrez_Gene (NCBI)CRYGA  1418  crystallin gamma A
AliasesCRY-g-A; CRYG1; CRYG5
GeneCards (Weizmann)CRYGA
Ensembl hg19 (Hinxton)ENSG00000168582 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168582 [Gene_View]  chr2:208160740-208163573 [Contig_View]  CRYGA [Vega]
ICGC DataPortalENSG00000168582
TCGA cBioPortalCRYGA
AceView (NCBI)CRYGA
Genatlas (Paris)CRYGA
WikiGenes1418
SOURCE (Princeton)CRYGA
Genetics Home Reference (NIH)CRYGA
Genomic and cartography
GoldenPath hg38 (UCSC)CRYGA  -     chr2:208160740-208163573 -  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYGA  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblCRYGA - 2q33.3 [CytoView hg19]  CRYGA - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBICRYGA [Mapview hg19]  CRYGA [Mapview hg38]
OMIM123660   
Gene and transcription
Genbank (Entrez)BC114456 BM698524 EF426311 KT001516
RefSeq transcript (Entrez)NM_014617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYGA
Cluster EST : UnigeneHs.122566 [ NCBI ]
CGAP (NCI)Hs.122566
Alternative Splicing GalleryENSG00000168582
Gene ExpressionCRYGA [ NCBI-GEO ]   CRYGA [ EBI - ARRAY_EXPRESS ]   CRYGA [ SEEK ]   CRYGA [ MEM ]
Gene Expression Viewer (FireBrowse)CRYGA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1418
GTEX Portal (Tissue expression)CRYGA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11844   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11844  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11844
Splice isoforms : SwissVarP11844
PhosPhoSitePlusP11844
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel   
Domain families : Pfam (Sanger)Crystall (PF00030)   
Domain families : Pfam (NCBI)pfam00030   
Domain families : Smart (EMBL)XTALbg (SM00247)  
Conserved Domain (NCBI)CRYGA
DMDM Disease mutations1418
Blocks (Seattle)CRYGA
PDB (SRS)1LER   
PDB (PDBSum)1LER   
PDB (IMB)1LER   
PDB (RSDB)1LER   
Structural Biology KnowledgeBase1LER   
SCOP (Structural Classification of Proteins)1LER   
CATH (Classification of proteins structures)1LER   
SuperfamilyP11844
Human Protein AtlasENSG00000168582
Peptide AtlasP11844
HPRD00433
IPIIPI00221079   IPI00883669   
Protein Interaction databases
DIP (DOE-UCLA)P11844
IntAct (EBI)P11844
FunCoupENSG00000168582
BioGRIDCRYGA
STRING (EMBL)CRYGA
ZODIACCRYGA
Ontologies - Pathways
QuickGOP11844
Ontology : AmiGOlens development in camera-type eye  structural constituent of eye lens  cellular_component  visual perception  
Ontology : EGO-EBIlens development in camera-type eye  structural constituent of eye lens  cellular_component  visual perception  
NDEx NetworkCRYGA
Atlas of Cancer Signalling NetworkCRYGA
Wikipedia pathwaysCRYGA
Orthology - Evolution
OrthoDB1418
GeneTree (enSembl)ENSG00000168582
Phylogenetic Trees/Animal Genes : TreeFamCRYGA
HOVERGENP11844
HOGENOMP11844
Homologs : HomoloGeneCRYGA
Homology/Alignments : Family Browser (UCSC)CRYGA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYGA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYGA
dbVarCRYGA
ClinVarCRYGA
1000_GenomesCRYGA 
Exome Variant ServerCRYGA
ExAC (Exome Aggregation Consortium)CRYGA (select the gene name)
Genetic variants : HAPMAP1418
Genomic Variants (DGV)CRYGA [DGVbeta]
DECIPHERCRYGA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYGA 
Mutations
ICGC Data PortalCRYGA 
TCGA Data PortalCRYGA 
Broad Tumor PortalCRYGA
OASIS PortalCRYGA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYGA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYGA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CRYGA
DgiDB (Drug Gene Interaction Database)CRYGA
DoCM (Curated mutations)CRYGA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYGA (select a term)
intoGenCRYGA
Cancer3DCRYGA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123660   
Orphanet
MedgenCRYGA
Genetic Testing Registry CRYGA
NextProtP11844 [Medical]
TSGene1418
GENETestsCRYGA
Target ValidationCRYGA
Huge Navigator CRYGA [HugePedia]
snp3D : Map Gene to Disease1418
BioCentury BCIQCRYGA
ClinGenCRYGA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1418
Chemical/Pharm GKB GenePA26915
Clinical trialCRYGA
Miscellaneous
canSAR (ICR)CRYGA (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYGA
EVEXCRYGA
GoPubMedCRYGA
iHOPCRYGA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:37 CEST 2017

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