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CRYGB (crystallin gamma B)

Identity

Alias_namesCRYG2
crystallin, gamma 1-2
crystallin, gamma B
Other aliasCTRCT39
HGNC (Hugo) CRYGB
LocusID (NCBI) 1419
Atlas_Id 62110
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 208142573 and ends at 208146153 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYGB   2409
Cards
Entrez_Gene (NCBI)CRYGB  1419  crystallin gamma B
AliasesCRYG2; CTRCT39
GeneCards (Weizmann)CRYGB
Ensembl hg19 (Hinxton)ENSG00000182187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182187 [Gene_View]  chr2:208142573-208146153 [Contig_View]  CRYGB [Vega]
ICGC DataPortalENSG00000182187
TCGA cBioPortalCRYGB
AceView (NCBI)CRYGB
Genatlas (Paris)CRYGB
WikiGenes1419
SOURCE (Princeton)CRYGB
Genetics Home Reference (NIH)CRYGB
Genomic and cartography
GoldenPath hg38 (UCSC)CRYGB  -     chr2:208142573-208146153 -  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYGB  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblCRYGB - 2q33.3 [CytoView hg19]  CRYGB - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBICRYGB [Mapview hg19]  CRYGB [Mapview hg38]
OMIM123670   615188   
Gene and transcription
Genbank (Entrez)BC074944 BC074945 BC117384 BC117388 BM666147
RefSeq transcript (Entrez)NM_005210
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYGB
Cluster EST : UnigeneHs.248102 [ NCBI ]
CGAP (NCI)Hs.248102
Alternative Splicing GalleryENSG00000182187
Gene ExpressionCRYGB [ NCBI-GEO ]   CRYGB [ EBI - ARRAY_EXPRESS ]   CRYGB [ SEEK ]   CRYGB [ MEM ]
Gene Expression Viewer (FireBrowse)CRYGB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1419
GTEX Portal (Tissue expression)CRYGB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07316   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07316  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07316
Splice isoforms : SwissVarP07316
PhosPhoSitePlusP07316
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel   
Domain families : Pfam (Sanger)Crystall (PF00030)   
Domain families : Pfam (NCBI)pfam00030   
Domain families : Smart (EMBL)XTALbg (SM00247)  
Conserved Domain (NCBI)CRYGB
DMDM Disease mutations1419
Blocks (Seattle)CRYGB
PDB (SRS)1LEU    1MYV    1MYX    1MYY    1MZ1    1MZ2    1MZ3    2JDF    2JDG   
PDB (PDBSum)1LEU    1MYV    1MYX    1MYY    1MZ1    1MZ2    1MZ3    2JDF    2JDG   
PDB (IMB)1LEU    1MYV    1MYX    1MYY    1MZ1    1MZ2    1MZ3    2JDF    2JDG   
PDB (RSDB)1LEU    1MYV    1MYX    1MYY    1MZ1    1MZ2    1MZ3    2JDF    2JDG   
Structural Biology KnowledgeBase1LEU    1MYV    1MYX    1MYY    1MZ1    1MZ2    1MZ3    2JDF    2JDG   
SCOP (Structural Classification of Proteins)1LEU    1MYV    1MYX    1MYY    1MZ1    1MZ2    1MZ3    2JDF    2JDG   
CATH (Classification of proteins structures)1LEU    1MYV    1MYX    1MYY    1MZ1    1MZ2    1MZ3    2JDF    2JDG   
SuperfamilyP07316
Human Protein AtlasENSG00000182187
Peptide AtlasP07316
HPRD00434
IPIIPI00217231   
Protein Interaction databases
DIP (DOE-UCLA)P07316
IntAct (EBI)P07316
FunCoupENSG00000182187
BioGRIDCRYGB
STRING (EMBL)CRYGB
ZODIACCRYGB
Ontologies - Pathways
QuickGOP07316
Ontology : AmiGOstructural constituent of eye lens  cellular_component  nucleus  cytoplasm  visual perception  lens fiber cell morphogenesis  
Ontology : EGO-EBIstructural constituent of eye lens  cellular_component  nucleus  cytoplasm  visual perception  lens fiber cell morphogenesis  
NDEx NetworkCRYGB
Atlas of Cancer Signalling NetworkCRYGB
Wikipedia pathwaysCRYGB
Orthology - Evolution
OrthoDB1419
GeneTree (enSembl)ENSG00000182187
Phylogenetic Trees/Animal Genes : TreeFamCRYGB
HOVERGENP07316
HOGENOMP07316
Homologs : HomoloGeneCRYGB
Homology/Alignments : Family Browser (UCSC)CRYGB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYGB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYGB
dbVarCRYGB
ClinVarCRYGB
1000_GenomesCRYGB 
Exome Variant ServerCRYGB
ExAC (Exome Aggregation Consortium)CRYGB (select the gene name)
Genetic variants : HAPMAP1419
Genomic Variants (DGV)CRYGB [DGVbeta]
DECIPHERCRYGB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYGB 
Mutations
ICGC Data PortalCRYGB 
TCGA Data PortalCRYGB 
Broad Tumor PortalCRYGB
OASIS PortalCRYGB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYGB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYGB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CRYGB
DgiDB (Drug Gene Interaction Database)CRYGB
DoCM (Curated mutations)CRYGB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYGB (select a term)
intoGenCRYGB
Cancer3DCRYGB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123670    615188   
Orphanet23423    14005    14011   
MedgenCRYGB
Genetic Testing Registry CRYGB
NextProtP07316 [Medical]
TSGene1419
GENETestsCRYGB
Target ValidationCRYGB
Huge Navigator CRYGB [HugePedia]
snp3D : Map Gene to Disease1419
BioCentury BCIQCRYGB
ClinGenCRYGB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1419
Chemical/Pharm GKB GenePA26916
Clinical trialCRYGB
Miscellaneous
canSAR (ICR)CRYGB (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYGB
EVEXCRYGB
GoPubMedCRYGB
iHOPCRYGB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:44:37 CEST 2017

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