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CRYGC (crystallin gamma C)

Identity

Alias_namesCRYG3
crystallin, gamma C
Other aliasCCL
CTRCT2
HGNC (Hugo) CRYGC
LocusID (NCBI) 1420
Atlas_Id 62111
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 208128137 and ends at 208129830 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYGC   2410
Cards
Entrez_Gene (NCBI)CRYGC  1420  crystallin gamma C
AliasesCCL; CRYG3; CTRCT2
GeneCards (Weizmann)CRYGC/TD>,/R>
Ensembl hg19 (Hinxton)ENSG00000163254 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163254 [Gene_View]  chr2:208128137-208129830 [Contig_View]  CRYGC [Vega]
ICGC DataPortalENSG00000163254
TCGA cBioPortalCRYGC
AceView (NCBI)CRYGC
Genatlas (Paris)CRYGC
WikiGenes1420
SOURCE (Princeton)CRYGC
Genetics Home Reference (NIH)CRYGC
Genomic and cartography
GoldenPath hg38 (UCSC)CRYGC  -     chr2:208128137-208129830 -  2q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CRYGC  -     2q33.3   [Description]    (hg19-Feb_2009)
EnsemblCRYGC - 2q33.3 [CytoView hg19]  CRYGC - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBICRYGC [Mapview hg19]  CRYGC [Mapview hg38]
OMIM123680   604307   
Gene and transcription
Genbank (Entrez)BC074954 BC074955 BU737104 KT455014 U66582
RefSeq transcript (Entrez)NM_020989
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CRYGC
Cluster EST : UnigeneHs.72910 [ NCBI ]
CGAP (NCI)Hs.72910
Alternative Splicing GalleryENSG00000163254
Gene ExpressionCRYGC [ NCBI-GEO ]   CRYGC [ EBI - ARRAY_EXPRESS ]   CRYGC [ SEEK ]   CRYGC [ MEM ]
Gene Expression Viewer (FireBrowse)CRYGC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1420
GTEX Portal (Tissue expression)CRYGC
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07315   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07315  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07315
Splice isoforms : SwissVarP07315
PhosPhoSitePlusP07315
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)   
Domains : Interpro (EBI)Beta/gamma_crystallin    CRYGC    G_crystallin-rel   
Domain families : Pfam (Sanger)Crystall (PF00030)   
Domain families : Pfam (NCBI)pfam00030   
Domain families : Smart (EMBL)XTALbg (SM00247)  
Conserved Domain (NCBI)CRYGC
DMDM Disease mutations1420
Blocks (Seattle)CRYGC
PDB (SRS)1LFE    2NBR   
PDB (PDBSum)1LFE    2NBR   
PDB (IMB)1LFE    2NBR   
PDB (RSDB)1LFE    2NBR   
Structural Biology KnowledgeBase1LFE    2NBR   
SCOP (Structural Classification of Proteins)1LFE    2NBR   
CATH (Classification of proteins structures)1LFE    2NBR   
SuperfamilyP07315
Human Protein AtlasENSG00000163254
Peptide AtlasP07315
HPRD00435
IPIIPI00220282   
Protein Interaction databases
DIP (DOE-UCLA)P07315
IntAct (EBI)P07315
FunCoupENSG00000163254
BioGRIDCRYGC
STRING (EMBL)CRYGC
ZODIACCRYGC
Ontologies - Pathways
QuickGOP07315
Ontology : AmiGOstructural constituent of eye lens  protein binding  nucleus  cytoplasm  visual perception  
Ontology : EGO-EBIstructural constituent of eye lens  protein binding  nucleus  cytoplasm  visual perception  
NDEx NetworkCRYGC
Atlas of Cancer Signalling NetworkCRYGC
Wikipedia pathwaysCRYGC
Orthology - Evolution
OrthoDB1420
GeneTree (enSembl)ENSG00000163254
Phylogenetic Trees/Animal Genes : TreeFamCRYGC
HOVERGENP07315
HOGENOMP07315
Homologs : HomoloGeneCRYGC
Homology/Alignments : Family Browser (UCSC)CRYGC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYGC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYGC
dbVarCRYGC
ClinVarCRYGC
1000_GenomesCRYGC 
Exome Variant ServerCRYGC
ExAC (Exome Aggregation Consortium)CRYGC (select the gene name)
Genetic variants : HAPMAP1420
Genomic Variants (DGV)CRYGC [DGVbeta]
DECIPHERCRYGC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCRYGC 
Mutations
ICGC Data PortalCRYGC 
TCGA Data PortalCRYGC 
Broad Tumor PortalCRYGC
OASIS PortalCRYGC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYGC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYGC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CRYGC
DgiDB (Drug Gene Interaction Database)CRYGC
DoCM (Curated mutations)CRYGC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYGC (select a term)
intoGenCRYGC
Cancer3DCRYGC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123680    604307   
Orphanet1584    23423    14001    14008   
MedgenCRYGC
Genetic Testing Registry CRYGC
NextProtP07315 [Medical]
TSGene1420
GENETestsCRYGC
Target ValidationCRYGC
Huge Navigator CRYGC [HugePedia]
snp3D : Map Gene to Disease1420
BioCentury BCIQCRYGC
ClinGenCRYGC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1420
Chemical/Pharm GKB GenePA26917
Clinical trialCRYGC
Miscellaneous
canSAR (ICR)CRYGC (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYGC
EVEXCRYGC
GoPubMedCRYGC
iHOPCRYGC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:05:25 CEST 2017

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