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CRYGD (crystallin, gamma D)

Identity

Alias_namesCRYG4
crystallin, gamma D
Other aliasCACA
CCA3
CCP
CTRCT4
PCC
cry-g-D
HGNC (Hugo) CRYGD
LocusID (NCBI) 1421
Atlas_Id 62112
Location 2q33.3  [Link to chromosome band 2q33]
Location_base_pair Starts at 208986331 and ends at 208989313 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CRYGD   2411
Cards
Entrez_Gene (NCBI)CRYGD  1421  crystallin, gamma D
AliasesCACA; CCA3; CCP; CRYG4; 
CTRCT4; PCC; cry-g-D
GeneCards (Weizmann)CRYGD
Ensembl hg19 (Hinxton)ENSG00000118231 [Gene_View]  chr2:208986331-208989313 [Contig_View]  CRYGD [Vega]
Ensembl hg38 (Hinxton)ENSG00000118231 [Gene_View]  chr2:208986331-208989313 [Contig_View]  CRYGD [Vega]
ICGC DataPortalENSG00000118231
TCGA cBioPortalCRYGD
AceView (NCBI)CRYGD
Genatlas (Paris)CRYGD
WikiGenes1421
SOURCE (Princeton)CRYGD
Genetics Home Reference (NIH)CRYGD
Genomic and cartography
GoldenPath hg19 (UCSC)CRYGD  -     chr2:208986331-208989313 -  2q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CRYGD  -     2q33.3   [Description]    (hg38-Dec_2013)
EnsemblCRYGD - 2q33.3 [CytoView hg19]  CRYGD - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBICRYGD [Mapview hg19]  CRYGD [Mapview hg38]
OMIM115700   123690   
Gene and transcription
Genbank (Entrez)BC117338 BC117340 CD674533 EL946552 HQ258094
RefSeq transcript (Entrez)NM_006891
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_008039 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)CRYGD
Cluster EST : UnigeneHs.546247 [ NCBI ]
CGAP (NCI)Hs.546247
Alternative Splicing GalleryENSG00000118231
Gene ExpressionCRYGD [ NCBI-GEO ]   CRYGD [ EBI - ARRAY_EXPRESS ]   CRYGD [ SEEK ]   CRYGD [ MEM ]
Gene Expression Viewer (FireBrowse)CRYGD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1421
GTEX Portal (Tissue expression)CRYGD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07320   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07320  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07320
Splice isoforms : SwissVarP07320
PhosPhoSitePlusP07320
Domaine pattern : Prosite (Expaxy)CRYSTALLIN_BETA_GAMMA (PS50915)   
Domains : Interpro (EBI)Beta/gamma_crystallin    G_crystallin-rel   
Domain families : Pfam (Sanger)Crystall (PF00030)   
Domain families : Pfam (NCBI)pfam00030   
Domain families : Smart (EMBL)XTALbg (SM00247)  
Conserved Domain (NCBI)CRYGD
DMDM Disease mutations1421
Blocks (Seattle)CRYGD
PDB (SRS)1H4A    1HK0    1LD0    2G98    2KFB    2KLJ    4GR7    4JGF   
PDB (PDBSum)1H4A    1HK0    1LD0    2G98    2KFB    2KLJ    4GR7    4JGF   
PDB (IMB)1H4A    1HK0    1LD0    2G98    2KFB    2KLJ    4GR7    4JGF   
PDB (RSDB)1H4A    1HK0    1LD0    2G98    2KFB    2KLJ    4GR7    4JGF   
Structural Biology KnowledgeBase1H4A    1HK0    1LD0    2G98    2KFB    2KLJ    4GR7    4JGF   
SCOP (Structural Classification of Proteins)1H4A    1HK0    1LD0    2G98    2KFB    2KLJ    4GR7    4JGF   
CATH (Classification of proteins structures)1H4A    1HK0    1LD0    2G98    2KFB    2KLJ    4GR7    4JGF   
SuperfamilyP07320
Human Protein AtlasENSG00000118231
Peptide AtlasP07320
HPRD00436
IPIIPI00215881   
Protein Interaction databases
DIP (DOE-UCLA)P07320
IntAct (EBI)P07320
FunCoupENSG00000118231
BioGRIDCRYGD
STRING (EMBL)CRYGD
ZODIACCRYGD
Ontologies - Pathways
QuickGOP07320
Ontology : AmiGOlens development in camera-type eye  structural constituent of eye lens  protein binding  nucleus  cytoplasm  visual perception  cellular response to reactive oxygen species  lens fiber cell differentiation  
Ontology : EGO-EBIlens development in camera-type eye  structural constituent of eye lens  protein binding  nucleus  cytoplasm  visual perception  cellular response to reactive oxygen species  lens fiber cell differentiation  
NDEx NetworkCRYGD
Atlas of Cancer Signalling NetworkCRYGD
Wikipedia pathwaysCRYGD
Orthology - Evolution
OrthoDB1421
GeneTree (enSembl)ENSG00000118231
Phylogenetic Trees/Animal Genes : TreeFamCRYGD
HOVERGENP07320
HOGENOMP07320
Homologs : HomoloGeneCRYGD
Homology/Alignments : Family Browser (UCSC)CRYGD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCRYGD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CRYGD
dbVarCRYGD
ClinVarCRYGD
1000_GenomesCRYGD 
Exome Variant ServerCRYGD
ExAC (Exome Aggregation Consortium)CRYGD (select the gene name)
Genetic variants : HAPMAP1421
Genomic Variants (DGV)CRYGD [DGVbeta]
DECIPHER (Syndromes)2:208986331-208989313  ENSG00000118231
CONAN: Copy Number AnalysisCRYGD 
Mutations
ICGC Data PortalCRYGD 
TCGA Data PortalCRYGD 
Broad Tumor PortalCRYGD
OASIS PortalCRYGD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCRYGD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCRYGD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch CRYGD
DgiDB (Drug Gene Interaction Database)CRYGD
DoCM (Curated mutations)CRYGD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CRYGD (select a term)
intoGenCRYGD
Cancer3DCRYGD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM115700    123690   
Orphanet1584    23423    14007    14006    14001    14008   
MedgenCRYGD
Genetic Testing Registry CRYGD
NextProtP07320 [Medical]
TSGene1421
GENETestsCRYGD
Huge Navigator CRYGD [HugePedia]
snp3D : Map Gene to Disease1421
BioCentury BCIQCRYGD
ClinGenCRYGD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1421
Chemical/Pharm GKB GenePA26918
Clinical trialCRYGD
Miscellaneous
canSAR (ICR)CRYGD (select the gene name)
Probes
Litterature
PubMed90 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCRYGD
EVEXCRYGD
GoPubMedCRYGD
iHOPCRYGD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:00:24 CET 2017

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